Hg_chrom4_TN10mRNA_7457
Organism: Heterodera glycines Gene Locus: chr4:3987174-3990349 Feature type: polypeptideProtein Sequence
Length: 659
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.676 | 1.235 | 0.414 | 0.576 | 0.405 | 2.218 | 0.831 | 2.124 | 0.405 | 0.718 | 0.506 | 1.607 | 1.18 | 1.255 | 0.465 | 2.146 | 1.07 | 0.46 | 0.35 | 0.803 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7057
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
DRKKKRKRR
|
— | — |
23-63
|
0.966
|
— | — |
0.000
|
— | — |
0.869
|
0.252
|
0.011
|
0.385
|
0.049
|
0.036
|
0.049
|
0.036
|
0.043
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008386
|
1.000
|
1.000
|
Hsc_gene_9941.t1
|
Hsc_gene_9941.t1
|
— |
O15522.2 Homeobox protein Nkx-2.8 [Homo sapiens]
|
NXS49061.1 NKX22 protein [Balaeniceps rex];NXX52599.1 NKX22 protein [Scopus umbretta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.941|GO:0009987_0.852|GO:0065007_0.841|GO:0050789_0.834|GO:0050794_0.827|GO:0032502_0.783|GO:0048856_0.783|GO:0032501_0.771|GO:0007275_0.763|GO:0008152_0.722|GO:0019222_0.722|GO:0031323_0.722|GO:0044237_0.722|GO:0009058_0.717|GO:0009059_0.717|GO:0010467_0.717|GO:0043170_0.717|GO:0044249_0.717|GO:0060255_0.704|GO:0009889_0.702|GO:0031326_0.702|GO:0006139_0.701|GO:0006351_0.701|GO:0016070_0.701|GO:0032774_0.701|GO:0034654_0.701|GO:0044238_0.701|GO:0090304_0.701|GO:0141187_0.701|GO:0048731_0.699|GO:0010468_0.698|GO:0010556_0.698|GO:0005575_0.696|GO:0080090_0.695|GO:0019219_0.691|GO:0051252_0.691|GO:0110165_0.691|GO:0003674_0.687|GO:0003676_0.687|GO:0005488_0.687|GO:0097159_0.687|GO:0006355_0.680|GO:2001141_0.680|GO:0003677_0.672|GO:0043565_0.672|GO:0003690_0.642|GO:1990837_0.642|GO:0005622_0.632|GO:0048513_0.627|GO:0043226_0.626|GO:0043229_0.620|GO:0030154_0.605|GO:0048869_0.605|GO:0006366_0.603|GO:0048518_0.596|GO:0048522_0.596|GO:0006357_0.590|GO:0016020_0.572|GO:0009891_0.560|GO:0009893_0.560|GO:0031325_0.560|GO:0031328_0.560|GO:0010604_0.550|GO:0045935_0.550|GO:0051254_0.550|GO:0010557_0.544|GO:0001067_0.537|GO:0000976_0.535|GO:0045893_0.532|GO:1902680_0.532|GO:0043227_0.507
|
IPR001356+461-521_463-525_464-520_470-520+|IPR009057+452-520+|IPR017970+496-519+|IPR050394+312-566+
|
SM00389+463-525+
|
PF00046+464-520+Homeodomain
|
— |
PTHR24340+312-566+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
91-326;378-475;516-659
|
3.000
|
1-90;327-377;476-515
|
1vnd_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.964
|
69044.910
|
8.418
|
20.000
|
14.568
|
11.684
|
50.076
|
49.924
|
9.863
|
4.704
|
61.760
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
740.580
|
635.335
|
454.693
|
368.014
|
115.527
|
44.457
|
60.145
|
207.379
|
232.781
|
2358.369
|
1447.403
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.711
|
-0.925
|
-0.198
|
-1.702
|
-1.365
|
— |
2.118
|
-1.643
|
-3.455
|
— |
-4.163
|
— | — |
No JSON data available for plots.