Hg_chrom4_TN10mRNA_7467
Organism: Heterodera glycines Gene Locus: chr4:4007588-4010409 Feature type: polypeptideProtein Sequence
Length: 529
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.989 | 0.528 | 0.516 | 0.652 | 0.441 | 0.63 | 0.81 | 1.418 | 1.302 | 2.146 | 0.458 | 1.112 | 2.625 | 0.982 | 0.926 | 1.593 | 0.62 | 1.002 | 0.291 | 0.612 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7064
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
mitochondria
|
— |
22-43
|
0.983
|
— | — |
1-17
|
— |
1.000
|
— |
12.000
|
0.125
|
0.302
|
0.010
|
0.173
|
0.768
|
0.414
|
0.422
|
0.158
|
0.271
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008388
|
1.000
|
1.000
|
Hsc_gene_9951.t1
|
Hsc_gene_9951.t1
|
— |
Q9D2V8.1 Major facilitator superfamily domain-containing protein 10 [Mus musculus]
|
KAI1708877.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0005575_0.890|GO:0110165_0.890|GO:0016020_0.864|GO:0005622_0.721|GO:0043226_0.701|GO:0005737_0.697|GO:0043227_0.686|GO:0043229_0.686|GO:0008150_0.677|GO:0043231_0.672|GO:0009987_0.629|GO:0005886_0.628|GO:0071944_0.628|GO:0031090_0.550|GO:0051179_0.530|GO:0006810_0.528|GO:0051234_0.528|GO:0003674_0.525
|
IPR011701+84-483+|IPR020846+79-521+|IPR036259+78-517_78-519+
|
— |
PF07690+84-483+Major_Facilitator_Superfamily
|
— |
PTHR23504+79-511+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-529
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
57830.070
|
9.212
|
18.500
|
15.879
|
14.745
|
35.539
|
64.461
|
10.397
|
5.482
|
48.960
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
274.284
|
162.869
|
265.900
|
235.251
|
355.141
|
669.273
|
248.130
|
466.091
|
1.028
|
298.224
|
170.854
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.480
|
0.393
|
— |
0.562
|
0.930
|
-1.425
|
-0.629
|
-0.769
|
-7.974
|
7.746
|
— | — | — |