Hg_chrom4_TN10mRNA_7468
Organism: Heterodera glycines Gene Locus: chr4:4012027-4014295 Feature type: polypeptideProtein Sequence
Length: 490
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 1.566 | 0.742 | 0.915 | 0.986 | 1.047 | 0.534 | 1.02 | 1.224 | 1.434 | 1.299 | 1.2 | 1.247 | 0.863 | 0.958 | 1.283 | 0.703 | 0.68 | 1.413 | 1.261 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7065
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
43-63
|
0.925
|
26-46
|
0.962
|
— | — |
0.000
|
— | — |
0.099
|
0.027
|
0.001
|
0.105
|
0.311
|
0.187
|
0.896
|
0.034
|
0.146
|
0.305
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008389
|
1.000
|
1.000
|
Hsc_gene_9952.t1
|
Hsc_gene_9952.t1
|
— |
Q9GKU6.1 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase FUT6 [Pongo pygmaeus]
|
KAF7636818.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.875|GO:0003674_0.814|GO:0003824_0.678|GO:0005575_0.666|GO:0110165_0.663|GO:0016740_0.638|GO:0016757_0.613|GO:0016758_0.612|GO:0008152_0.608|GO:0008417_0.606|GO:0009987_0.606|GO:0005622_0.575|GO:0016020_0.549|GO:0043226_0.537|GO:0043229_0.526
|
IPR001503+116-469_285-447+|IPR031481+152-257+|IPR038577+221-429+
|
— |
PF00852+285-447+Glycosyltransferase_family_10_(fucosyltransferase)_C-term|PF17039+152-257+Fucosyltransferase,_N-terminal
|
G3DSA:3.40.50.11660:FF:000002+222-426+Alpha-(1,3)-fucosyltransferase
|
PTHR48350+116-469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-490
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.891
|
56189.520
|
9.270
|
21.000
|
25.306
|
12.653
|
49.388
|
50.612
|
15.306
|
10.000
|
45.918
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
417.419
|
6.099
|
296.651
|
287.822
|
75.116
|
17.407
|
18.458
|
156.402
|
977.786
|
771.136
|
859.701
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.374
|
5.419
|
— |
-1.971
|
-2.097
|
— |
3.065
|
-2.941
|
— | — | — | — | — |
No JSON data available for plots.