Hg_chrom4_TN10mRNA_7469
Organism: Heterodera glycines Gene Locus: chr4:4015704-4029020 Feature type: polypeptideProtein Sequence
Length: 1,772
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.945 | 1.037 | 0.862 | 0.915 | 0.997 | 1.418 | 0.537 | 1.411 | 0.966 | 1.449 | 0.633 | 1.361 | 1.348 | 1.085 | 1.163 | 1.242 | 0.86 | 0.923 | 0.868 | 0.664 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7066
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— |
PQDKRLR,RQWKRKT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.339
|
0.123
|
0.018
|
0.608
|
0.340
|
0.597
|
0.386
|
0.028
|
0.340
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008390
|
1.000
|
1.000
|
Hsc_gene_9953.t1
|
Hsc_gene_14762.t1;Hsc_gene_15331.t1;Hsc_gene_24262.t1;Hsc_gene_9953.t1
|
— |
G5EDY0.1 Phosphatidylinositol 3-kinase piki-1 [Caenorhabditis elegans]
|
KAI1725914.1 phosphatidylinositol 3- and 4-kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016301|GO:0035091|GO:0046854
|
GO:0008150_0.973|GO:0009987_0.904|GO:0005575_0.877|GO:0110165_0.874|GO:0005622_0.749|GO:0003674_0.743|GO:0016020_0.742|GO:0065007_0.730|GO:0008152_0.718|GO:0050789_0.711|GO:0044237_0.698|GO:0009058_0.672|GO:0050794_0.670|GO:0044238_0.668|GO:0044249_0.661|GO:0005737_0.651|GO:0050896_0.599|GO:0006793_0.586|GO:0006796_0.583|GO:0003824_0.555|GO:0006629_0.545|GO:0008610_0.543|GO:0019637_0.543|GO:0044255_0.542|GO:0046486_0.541|GO:0006644_0.540|GO:0006650_0.540|GO:0006661_0.537|GO:0008654_0.537|GO:0045017_0.537|GO:0046474_0.537|GO:0046488_0.537|GO:0090407_0.537|GO:0071944_0.534|GO:0016740_0.528|GO:0016043_0.523|GO:0071840_0.523|GO:0032502_0.513|GO:0048856_0.513|GO:0005886_0.507
|
IPR000008+1612-1765_1630-1725_1630-1756+|IPR000341+431-551_446-548_470-546+|IPR000403+1161-1436_1186-1388_1187-1449+|IPR001263+912-1092_912-1102_919-1089+|IPR001683+1477-1589_1477-1593_1507-1588+|IPR002420+692-798_698-897_720-789+|IPR011009+1130-1442+|IPR015433+176-1443+|IPR016024+897-1090+|IPR018936+1289-1309+|IPR029071+468-545+|IPR035892+697-892_699-864_1610-1768_1615-1751+|IPR036871+1457-1597_1476-1600+|IPR036940+1242-1437+|IPR042236+903-1093+
|
SM00142+692-798+|SM00144+431-551+|SM00145+912-1102+|SM00146+1187-1449+|SM00239+1630-1756+|SM00312+1477-1589+
|
PF00168+1630-1725+C2_domain|PF00454+1186-1388+Phosphatidylinositol_3-_and_4-kinase|PF00613+919-1089+Phosphoinositide_3-kinase_family,_accessory_domain_(PIK_domain)|PF00787+1507-1588+PX_domain|PF00792+720-789+Phosphoinositide_3-kinase_C2|PF00794+470-546+PI3-kinase_family,_ras-binding_domain
|
— |
PTHR10048+176-1443+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-114
|
1.000
|
115-1772
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
198438.360
|
6.831
|
10.000
|
23.420
|
11.061
|
47.348
|
52.652
|
12.698
|
10.722
|
50.169
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1788.020
|
2991.495
|
2133.926
|
1527.318
|
1179.889
|
1402.430
|
1325.107
|
1833.425
|
1129.199
|
2328.089
|
1814.279
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.716
|
-1.107
|
-0.374
|
-0.405
|
0.265
|
— | — |
-0.328
|
— | — | — | — | — |
No JSON data available for plots.