Hg_chrom4_TN10mRNA_7471
Organism: Heterodera glycines Gene Locus: chr4:4034237-4037592 Feature type: polypeptideProtein Sequence
Length: 559
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.102 | 1.248 | 1.236 | 0.987 | 1.252 | 1.009 | 0.575 | 0.894 | 0.875 | 1.015 | 1.274 | 1.894 | 1.441 | 0.791 | 0.803 | 0.894 | 0.85 | 1.166 | 0.688 | 0.316 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7068
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.503
|
0.208
|
0.025
|
0.617
|
0.152
|
0.149
|
0.167
|
0.010
|
0.171
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008391
|
1.000
|
1.000
|
Hsc_gene_9954.t1
|
Hsc_gene_9954.t1
|
— | — |
KAI3417518.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.952|GO:0005575_0.782|GO:0110165_0.781|GO:0009987_0.732|GO:0016020_0.688|GO:0071944_0.594|GO:0005622_0.587|GO:0005886_0.575|GO:0043226_0.534|GO:0005737_0.509|GO:0043229_0.508
|
IPR000210+393-461_393-491_396-490+|IPR002083+263-380+|IPR008974+229-389+|IPR011333+392-520_396-489+
|
SM00225+393-491+
|
PF00651+396-490+BTB/POZ_domain
|
— |
PTHR47022+263-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-167
|
1.000
|
168-559
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
62103.820
|
5.584
|
-6.000
|
28.444
|
8.945
|
49.195
|
50.805
|
14.132
|
14.311
|
52.594
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
purple
|
973.143
|
587.201
|
364.933
|
473.823
|
1173.843
|
505.870
|
4362.341
|
188.286
|
13.113
|
1376.553
|
792.221
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.918
|
-0.447
|
0.488
|
1.278
|
-1.202
|
3.119
|
-1.529
|
4.675
|
-6.854
|
5.378
|
— | — | — |
No JSON data available for plots.