SCN Proteipedia

Hg_chrom4_TN10mRNA_7472

Organism: Heterodera glycines Gene Locus: chr4:4045845-4053145 Feature type: polypeptide

Protein Sequence

Length: 647

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.755	1.582	0.674	1.173	0.927	1.625	0.718	1.005	0.962	1.211	0.796	1.182	1.202	1.278	1.104	1.281	1.09	0.585	0.713	0.682	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7069	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-Not_Clustered	0.548

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRGSLLDEIMAESEEKSRR	—	—	11-31	0.916	—	—	0.000	—	—	0.315	0.209	0.018	0.638	0.205	0.378	0.315	0.032	0.361	0.085

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008392	1.000	1.000	Hsc_gene_9955.t1	Hsc_gene_9955.t1	—	P22681.2 E3 ubiquitin-protein ligase CBL [Homo sapiens]	KAH7732177.1 E3 ubiquitin-protein ligase CBL-B [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0001784\|GO:0004842\|GO:0005509\|GO:0007166\|GO:0023051	GO:0008150_0.970\|GO:0009987_0.931\|GO:0065007_0.839\|GO:0050789_0.830\|GO:0050794_0.823\|GO:0005575_0.786\|GO:0110165_0.786\|GO:0050896_0.760\|GO:0005622_0.715\|GO:0048519_0.706\|GO:0003674_0.700\|GO:0005488_0.684\|GO:0048523_0.683\|GO:0051716_0.666\|GO:0008152_0.600\|GO:0043170_0.600\|GO:0044238_0.572\|GO:0007154_0.552\|GO:0005515_0.549\|GO:0016020_0.547\|GO:0019538_0.547\|GO:0023052_0.540\|GO:0051179_0.526\|GO:0007165_0.522\|GO:0051234_0.502\|GO:0006810_0.501	IPR001841+385-425_385-426+\|IPR003153+58-177+\|IPR011992+181-266+\|IPR013083+358-441+\|IPR014741+182-265+\|IPR014742+259-353_267-352+\|IPR017907+400-409+\|IPR024159+53-354+\|IPR024162+54-539+\|IPR036537+50-178_56-180+\|IPR036860+267-353_268-353+	SM00184+385-425+	PF02262+58-177+CBL_proto-oncogene_N-terminal_domain_1\|PF02761+182-265+CBL_proto-oncogene_N-terminus,_EF_hand-like_domain\|PF02762+267-352+CBL_proto-oncogene_N-terminus,_SH2-like_domain\|PF13920+383-431+Zinc_finger,_C3HC4_type_(RING_finger)	—	PTHR23007+54-539+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	443-647	1.000	1-442	4a4c_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.911	71964.390	8.262	15.500	21.947	9.583	50.696	49.304	12.674	9.274	52.550

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	570.492	677.230	582.489	610.873	554.792	944.609	817.013	507.520	378.935	451.253	420.260

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.446	-0.286	0.177	-0.172	0.783	-0.199	-0.997	0.828	—	—	—	—	—

No JSON data available for plots.

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