Hg_chrom4_TN10mRNA_7473
Organism: Heterodera glycines Gene Locus: chr4:4053535-4055433 Feature type: polypeptideProtein Sequence
Length: 337
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 1.311 | 0.647 | 0.716 | 1.286 | 1.293 | 1.13 | 1.78 | 0.528 | 1.163 | 0.54 | 1.396 | 1.401 | 0.799 | 1.635 | 1.187 | 0.924 | 0.764 | 0.457 | 0.349 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7070
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RAEKRHR
|
31-51
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.788
|
0.188
|
0.011
|
0.469
|
0.054
|
0.039
|
0.068
|
0.014
|
0.108
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008393
|
1.000
|
1.000
|
Hsc_gene_9956.t1
|
Hsc_gene_9956.t1
|
— |
Q5XHB2.1 Dual specificity protein phosphatase 22 [Xenopus tropicalis]
|
KAI1722298.1 dual specificity phosphatase, catalytic domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006470|GO:0016311
|
GO:0008150_0.851|GO:0005575_0.772|GO:0110165_0.772|GO:0009987_0.768|GO:0003674_0.759|GO:0005622_0.679|GO:0065007_0.654|GO:0050789_0.641|GO:0050794_0.621|GO:0016020_0.573|GO:0003824_0.569|GO:0016787_0.548|GO:0050896_0.545|GO:0016788_0.534|GO:0140096_0.524|GO:0016791_0.521|GO:0042578_0.521
|
IPR000340+58-187+|IPR000387+108-165+|IPR020422+49-188_49-191+|IPR029021+13-190_39-189+
|
SM00195+49-188+
|
PF00782+58-187+Dual_specificity_phosphatase,_catalytic_domain
|
— |
PTHR45948+27-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42;232-337
|
1.000
|
43-231
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
37137.530
|
7.730
|
7.000
|
26.409
|
10.386
|
51.039
|
48.961
|
15.134
|
11.276
|
51.929
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
saddlebrown
|
207.767
|
126.838
|
330.168
|
196.945
|
163.636
|
257.941
|
140.730
|
236.218
|
210.385
|
206.513
|
208.173
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.151
|
0.498
|
-0.637
|
-0.301
|
0.672
|
-0.864
|
— |
-0.602
|
— | — | — | — | — |
No JSON data available for plots.