Hg_chrom4_TN10mRNA_7474
Organism: Heterodera glycines Gene Locus: chr4:4057312-4058859 Feature type: polypeptideProtein Sequence
Length: 212
(Signal peptide: 1-40)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.262 | 1.097 | 1.372 | 1.301 | 0.943 | 0.847 | 0.842 | 0.943 | 0.524 | 0.574 | 0.429 | 2.497 | 1.31 | 1.089 | 1.925 | 1.213 | 0.773 | 0.858 | 1.451 | 0.277 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7071
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRKR,RRRK
|
— | — | — | — |
1-40
|
0.509
|
0.999
|
0.000
|
0.000
|
0.057
|
0.385
|
0.065
|
0.094
|
0.061
|
0.030
|
0.077
|
0.026
|
0.150
|
0.985
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003795
|
1.000
|
2.000
|
Hsc_gene_9957.t1;Hsc_gene_9957.t2
|
Hsc_gene_9957.t1;Hsc_gene_9957.t2
|
— | — |
KAI1700766.1 insulin-like peptide 17 [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005179|GO:0005576
|
GO:0008150_0.940|GO:0032501_0.799|GO:0032502_0.783|GO:0048856_0.783|GO:0007275_0.764|GO:0009791_0.685|GO:0002119_0.670|GO:0002164_0.670|GO:0040024_0.670
|
IPR016179+50-204+|IPR022353+190-204+|IPR036438+47-207+
|
SM00078+50-204+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
65-177
|
2.000
|
1-64;178-212
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
23445.220
|
6.471
|
0.000
|
27.358
|
9.434
|
48.585
|
51.415
|
14.151
|
13.208
|
58.491
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
845.160
|
185.046
|
1931.332
|
544.988
|
154.743
|
144.755
|
136.470
|
1823.034
|
746.873
|
1292.284
|
1058.536
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.155
|
1.421
|
-1.717
|
-1.850
|
— | — |
3.556
|
-3.599
|
— | — | — | — | — |