Hg_chrom4_TN10mRNA_7475
Organism: Heterodera glycines Gene Locus: chr4:4059467-4061053 Feature type: polypeptideProtein Sequence
Length: 361
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.548 | 3.028 | 0.151 | 0.764 | 0.739 | 1.207 | 2.045 | 1.524 | 1.046 | 0.749 | 0.294 | 1.141 | 1.077 | 2.877 | 0.961 | 0.594 | 0.545 | 0.294 | 0.639 | 0.57 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7072
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.905
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.143
|
— | — |
0.064
|
0.059
|
0.004
|
0.145
|
0.487
|
0.271
|
0.314
|
0.001
|
0.515
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002056
|
1.000
|
3.000
|
Hsc_gene_9958.t1;Hsc_gene_9958.t2;Hsc_gene_9958.t3
|
Hsc_gene_9958.t1;Hsc_gene_9958.t2;Hsc_gene_9958.t3
|
— | — | — |
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+11-57+|IPR008160+210-267_246-303_288-340+|IPR050632+16-348+
|
— |
PF01391+210-267_246-303_288-340+Collagen_triple_helix_repeat_(20_copies)|PF01484+11-57+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+16-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
82-361
|
1.000
|
1-81
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
37926.110
|
8.499
|
10.500
|
14.958
|
9.695
|
40.166
|
59.834
|
9.695
|
5.263
|
62.327
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
28.604
|
29.602
|
10.734
|
2.766
|
4.521
|
15.482
|
2.438
|
5.788
|
5.848
|
94.007
|
56.225
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.694
|
-3.560
|
-1.848
|
— |
1.798
|
-2.655
|
-1.531
|
— | — | — | — | — | — |
No JSON data available for plots.