Hg_chrom4_TN10mRNA_7481
Organism: Heterodera glycines Gene Locus: chr4:4077230-4080890 Feature type: polypeptideProtein Sequence
Length: 478
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.511 | 1.46 | 0.799 | 1.299 | 0.697 | 0.697 | 0.996 | 1.36 | 1.116 | 1.187 | 1.363 | 1.477 | 2.034 | 0.925 | 0.854 | 1.106 | 0.686 | 0.951 | 0.805 | 0.677 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7077
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.790
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— |
44-64
|
0.982
|
32-83
|
0.716
|
1-22
|
0.966
|
1.000
|
0.000
|
0.000
|
0.244
|
0.375
|
0.081
|
0.352
|
0.241
|
0.088
|
0.181
|
0.010
|
0.201
|
0.721
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003785
|
2.000
|
1.000
|
Hsc_gene_9872.t1
|
Hsc_gene_9962.t1;Hsc_gene_9962.t2
|
— | — |
XP_065806050.1 serine protease 27-like [Labrus bergylta];XP_065806051.1 serine protease 27-like [Labrus bergylta]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.825|GO:0005575_0.807|GO:0110165_0.805|GO:0003674_0.702
|
IPR001254+227-468_228-473_256-466+|IPR001314+266-281_337-351_419-431+|IPR009003+221-473+|IPR033116+420-431+|IPR043504+223-470+|IPR051333+227-452+
|
SM00020+227-468+
|
PF00089+256-466+Trypsin
|
— |
PTHR24260+227-452+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-478
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.890
|
53526.970
|
9.531
|
28.500
|
24.477
|
13.389
|
45.397
|
54.603
|
15.900
|
8.577
|
50.209
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
126.397
|
7.372
|
27.773
|
24.368
|
21.114
|
190.359
|
34.485
|
406.922
|
37.577
|
257.655
|
163.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.684
|
1.590
|
— | — |
3.182
|
-2.457
|
0.989
|
-3.419
|
— | — | — | — | — |