Hg_chrom4_TN10mRNA_7482
Organism: Heterodera glycines Gene Locus: chr4:4086674-4091994 Feature type: polypeptideProtein Sequence
Length: 428
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.679 | 1.576 | 0.637 | 0.806 | 0.857 | 0.779 | 0.668 | 1.869 | 0.623 | 1.452 | 0.885 | 1.787 | 1.168 | 1.033 | 1.43 | 1.068 | 1.072 | 0.743 | 1.618 | 1.168 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7078
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
26D05|AY101191.1#tn22jg10852.t1
|
— | — | — | — |
21-Not_Clustered
|
0.561
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — |
5-37
|
0.998
|
— | — |
0.143
|
— | — |
0.120
|
0.140
|
0.020
|
0.357
|
0.477
|
0.271
|
0.384
|
0.008
|
0.165
|
0.773
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
O62146.2 Putative phospholipase B-like 2 [Caenorhabditis elegans]
|
KAI1709797.1 phospholipase B domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004620
|
GO:0005575_0.887|GO:0110165_0.887|GO:0016020_0.682|GO:0043226_0.661|GO:0043227_0.626|GO:0005622_0.592|GO:0005737_0.521
|
IPR007000+171-422_172-419+
|
— |
PF04916+172-419+Phospholipase_B
|
— |
PTHR12370+171-422+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-428
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
49122.190
|
9.764
|
26.000
|
25.234
|
14.019
|
49.065
|
50.935
|
16.589
|
8.645
|
48.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
501.829
|
0.619
|
4.461
|
17.496
|
6.635
|
3.295
|
12.978
|
3.882
|
1.028
|
2176.218
|
1243.994
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.624
|
4.694
|
2.082
|
-1.421
|
— |
1.993
|
— |
1.878
|
-10.870
|
3.989
|
-7.907
|
— | — |
No JSON data available for plots.