Hg_chrom4_TN10mRNA_7483
Organism: Heterodera glycines Gene Locus: chr4:4092366-4093013 Feature type: polypeptideProtein Sequence
Length: 141
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 1.319 | 1.289 | 0.734 | 0.709 | 1.637 | 0.929 | 1.773 | 0.946 | 1.054 | 0.645 | 0.834 | 0.788 | 1.091 | 0.289 | 1.216 | 1.163 | 0.86 | 1.091 | 1.669 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7079
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
26D05|AY1011911#tn22jg10852t1
|
Hsc_gene_9965
|
— | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.354
|
0.232
|
0.011
|
0.512
|
0.211
|
0.433
|
0.266
|
0.002
|
0.321
|
0.605
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008395
|
1.000
|
1.000
|
Hsc_gene_9965.t1
|
— | — |
P15704.1 Endoglucanase [Clostridium saccharobutylicum]
|
AAO25506.1 cellulase [Heterodera glycines]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000272|GO:0004553
|
GO:0008150_0.919|GO:0003674_0.840|GO:0008152_0.791|GO:0044238_0.765|GO:0043170_0.752|GO:0003824_0.719|GO:0009056_0.708|GO:0009057_0.692|GO:0016787_0.685|GO:0005975_0.681|GO:0005976_0.679|GO:0000272_0.674|GO:0016052_0.674|GO:0044042_0.673|GO:0009251_0.670|GO:0030243_0.670|GO:0030245_0.670|GO:0051273_0.670|GO:0051275_0.670|GO:0016798_0.661|GO:0004553_0.659|GO:0008810_0.650
|
IPR001547+18-95+|IPR017853+21-138+
|
— |
PF00150+18-95+Cellulase_(glycosyl_hydrolase_family_5)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-141
|
4xzb_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
15503.120
|
4.622
|
-5.500
|
20.567
|
13.475
|
48.227
|
51.773
|
9.220
|
11.348
|
56.738
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
268.148
|
2.147
|
85.084
|
637.906
|
65.297
|
1.989
|
7.516
|
59.008
|
974.710
|
120.011
|
486.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.088
|
8.081
|
3.010
|
-3.323
|
-5.013
|
1.929
|
4.797
|
-2.832
|
— | — | — | — | — |
No JSON data available for plots.