Hg_chrom4_TN10mRNA_7485
Organism: Heterodera glycines Gene Locus: chr4:4102496-4104846 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.405 | 1.851 | 0.814 | 0.172 | 1.244 | 0.383 | 1.066 | 0.746 | 2.101 | 1.21 | 1.131 | 0.878 | 2.349 | 0.765 | 0.812 | 0.924 | 0.652 | 0.678 | 1.148 | 1.171 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7081
|
— | — |
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
5.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.932
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KAIHRGKEIGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.614
|
0.335
|
0.043
|
0.530
|
0.145
|
0.070
|
0.047
|
0.038
|
0.169
|
0.454
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008396
|
1.000
|
1.000
|
Hsc_gene_9967.t1
|
Hsc_gene_9967.t1
|
— | — |
KAI3417076.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.631|GO:0110165_0.620|GO:0008150_0.570|GO:0005622_0.565|GO:0005737_0.553|GO:0003674_0.504
|
IPR001870+1-189+|IPR003877+105-186+|IPR013320+100-189+|IPR043136+15-197+
|
— |
PF00622+105-186+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
22968.270
|
6.727
|
0.500
|
24.876
|
15.423
|
44.776
|
55.224
|
12.935
|
11.940
|
44.279
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
126.452
|
65.001
|
30.922
|
47.472
|
26.322
|
15.979
|
53.268
|
23.157
|
27.897
|
434.009
|
259.961
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.305
|
-0.590
|
0.731
|
-0.887
|
— |
1.746
|
— |
1.347
|
— | — | — | — | — |
No JSON data available for plots.