Hg_chrom4_TN10mRNA_7495
Organism: Heterodera glycines Gene Locus: chr4:4134894-4137439 Feature type: polypeptideProtein Sequence
Length: 229
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 1.016 | 0.715 | 1.506 | 0.801 | 0.784 | 1.196 | 2.183 | 1.164 | 0.472 | 1.059 | 1.284 | 0.728 | 1.008 | 2.584 | 1.372 | 0.286 | 0.728 | 1.008 | 0.514 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7088
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RHRR,RSKKRAR,KKSQSNCGTHGRRRRED,RKTTAVICAGNGRTARR
|
70-91
|
0.984
|
6-26
|
0.951
|
— | — |
0.000
|
— | — |
0.573
|
0.216
|
0.035
|
0.357
|
0.073
|
0.011
|
0.013
|
0.063
|
0.164
|
0.192
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003796
|
2.000
|
1.000
|
Hsc_gene_3196.t2
|
— | — |
Q3T0P5.1 Caspase-6 [Bos taurus]
|
KAI3420785.1 Ced-3p [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004197|GO:0006508
|
GO:0008150_0.857|GO:0005575_0.817|GO:0110165_0.817|GO:0003674_0.797|GO:0009987_0.795|GO:0005622_0.698|GO:0016020_0.648|GO:0003824_0.629|GO:0065007_0.628|GO:0008219_0.626|GO:0012501_0.624|GO:0050789_0.618|GO:0016787_0.609|GO:0140096_0.603|GO:0050794_0.602|GO:0008233_0.596|GO:0006915_0.592|GO:0050896_0.580|GO:0043226_0.569|GO:0043229_0.558|GO:0008152_0.546|GO:0004175_0.531|GO:0048518_0.528|GO:0005737_0.524|GO:0008234_0.524|GO:0032502_0.517|GO:0048856_0.517|GO:0043170_0.515|GO:0044238_0.513|GO:0043227_0.505|GO:0043231_0.503
|
IPR001309+1-24+|IPR002138+55-85+|IPR011600+2-85+|IPR029030+2-85+
|
— |
PF00656+2-85+Caspase_domain
|
— |
PTHR47901+3-85+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
170-229
|
1.000
|
1-169
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
25605.150
|
10.981
|
30.000
|
32.751
|
10.044
|
51.528
|
48.472
|
24.017
|
8.734
|
51.528
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
salmon
|
62.442
|
6.317
|
18.120
|
12.243
|
11.580
|
7.015
|
4.252
|
7.154
|
17.898
|
234.756
|
141.817
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.290
|
— | — | — | — | — | — | — | — | — | — | — |
8.015
|
No JSON data available for plots.