Hg_chrom4_TN10mRNA_7499
Organism: Heterodera glycines Gene Locus: chr4:4145479-4148596 Feature type: polypeptideProtein Sequence
Length: 559
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.165 | 0.957 | 0.943 | 0.925 | 0.954 | 1.33 | 0.937 | 1.163 | 0.716 | 1.45 | 0.678 | 1.473 | 1.839 | 0.963 | 1.095 | 1.022 | 0.616 | 0.867 | 0.963 | 0.316 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — |
46-86
|
0.919
|
— | — |
0.000
|
— | — |
0.645
|
0.354
|
0.030
|
0.584
|
0.266
|
0.058
|
0.124
|
0.173
|
0.072
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008401
|
1.000
|
1.000
|
Hsc_gene_9979.t1
|
Hsc_gene_10588.t1
|
— |
Q0V8E4.1 Asparagine synthetase domain-containing protein 1 [Bos taurus]
|
KAI1728457.1 aminotransferase class I and II domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004066|GO:0006529
|
GO:0005575_0.889|GO:0110165_0.885|GO:0005622_0.803|GO:0005737_0.737|GO:0016020_0.595|GO:0043226_0.544|GO:0043229_0.530|GO:0043227_0.514
|
IPR001962+256-532_435-533+|IPR014729+249-553+|IPR051857+62-544+
|
— |
PF00733+435-533+Asparagine_synthase
|
— |
PTHR45937+62-544+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-559
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
61427.110
|
6.554
|
0.500
|
23.077
|
11.270
|
43.292
|
56.708
|
12.165
|
10.912
|
51.521
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
247.986
|
198.231
|
295.405
|
449.571
|
394.407
|
289.830
|
599.147
|
252.091
|
58.691
|
111.416
|
88.819
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.344
|
1.044
|
0.716
|
-0.221
|
-0.430
|
1.059
|
-0.309
|
1.393
|
— | — | — | — | — |
No JSON data available for plots.