Hg_chrom4_TN10mRNA_7506
Organism: Heterodera glycines Gene Locus: chr4:4170383-4173325 Feature type: polypeptideProtein Sequence
Length: 483
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.915 | 1.348 | 0.866 | 0.286 | 1.38 | 1.274 | 0.715 | 1.656 | 1.426 | 1.259 | 1.318 | 2.558 | 1.955 | 0.478 | 0.634 | 0.68 | 0.645 | 0.722 | 0.956 | 0.609 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7096
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.113
|
0.284
|
0.107
|
0.266
|
0.364
|
0.062
|
0.135
|
0.008
|
0.159
|
0.762
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000509
|
2.000
|
5.000
|
Hsc_gene_14002.t1;Hsc_gene_22784.t1;Hsc_gene_4451.t1;Hsc_gene_8457.t1;Hsc_gene_9851.t1
|
— | — |
P18569.1 Ecdysteroid UDP-glucosyltransferase [Autographa californica nucleopolyhedrovirus]
|
KAH7722058.1 Protein UGT-54 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.865|GO:0003674_0.764|GO:0009987_0.680|GO:0003824_0.655|GO:0005575_0.645|GO:0110165_0.624|GO:0008152_0.601|GO:0016740_0.591|GO:0005622_0.566|GO:0016757_0.557|GO:0016758_0.557|GO:0016020_0.548|GO:0005737_0.532|GO:0008194_0.525|GO:0043226_0.506|GO:0043229_0.506
|
IPR002213+5-440_210-440+|IPR035595+352-395+|IPR050271+18-440+
|
— |
PF00201+210-440+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+18-440+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
479-483
|
1.000
|
1-478
|
7bv3_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.500
|
55265.600
|
6.713
|
2.000
|
28.157
|
13.665
|
47.619
|
52.381
|
15.114
|
13.043
|
41.201
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
red
|
310.955
|
65.741
|
329.168
|
221.323
|
121.900
|
162.553
|
165.571
|
515.856
|
5.654
|
762.896
|
438.364
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.098
|
1.615
|
-0.465
|
-0.892
|
0.430
|
— | — | — |
-7.166
|
5.461
|
— | — | — |
No JSON data available for plots.