Hg_chrom4_TN10mRNA_7509
Organism: Heterodera glycines Gene Locus: chr4:4181629-4183506 Feature type: polypeptideProtein Sequence
Length: 412
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.693 | 0.903 | 0.971 | 1.59 | 0.647 | 0.934 | 1.098 | 1.456 | 0.863 | 1.115 | 0.552 | 1.713 | 1.281 | 0.747 | 0.991 | 1.283 | 0.517 | 0.993 | 0.187 | 0.286 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7098
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.629
|
0.427
|
0.026
|
0.599
|
0.166
|
0.084
|
0.128
|
0.306
|
0.143
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001655
|
3.000
|
1.000
|
Hsc_gene_9985.t1
|
Hsc_gene_9985.t1
|
— | — |
KAI1724403.1 non-SMC mitotic condensation complex subunit 1 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004298|GO:0016787
|
GO:0005575_0.773|GO:0110165_0.773|GO:0003674_0.631|GO:0008150_0.575|GO:0005622_0.570|GO:0005737_0.526|GO:0003824_0.509|GO:0009987_0.501
|
IPR000246+2-351_61-263+|IPR029055+2-317+|IPR037464+1-389+
|
— |
PF01112+61-263+Asparaginase
|
— |
PTHR10188+2-351+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-412
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
43082.090
|
6.871
|
3.000
|
20.631
|
8.738
|
40.291
|
59.709
|
11.408
|
9.223
|
60.194
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
steelblue
|
575.703
|
1018.538
|
542.821
|
621.687
|
739.999
|
660.032
|
934.990
|
623.017
|
255.009
|
399.535
|
337.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.139
|
-0.850
|
0.305
|
0.220
|
— |
0.512
|
— |
0.727
|
— | — | — | — | — |
No JSON data available for plots.