Hg_chrom4_TN10mRNA_7510
Organism: Heterodera glycines Gene Locus: chr4:4192075-4199019 Feature type: polypeptideProtein Sequence
Length: 857
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.814 | 1.411 | 0.743 | 0.966 | 0.564 | 1.047 | 0.722 | 1.459 | 1.037 | 1.435 | 0.495 | 1.373 | 1.134 | 1.077 | 1.524 | 1.5 | 1.052 | 0.725 | 1.167 | 0.686 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7099
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.506
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRLMVERRRARRSNK,KRFGLPPTMERRERRKMP,RRERRKMPLSHKQTRPGRAR
|
68-88
|
0.999
|
47-82
|
0.989
|
— | — |
0.000
|
— | — |
0.073
|
0.063
|
0.023
|
0.132
|
0.281
|
0.271
|
0.150
|
0.091
|
0.814
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003799
|
2.000
|
1.000
|
Hsc_gene_9988.t1
|
Hsc_gene_9988.t1
|
— |
Q9U320.1 G-protein coupled receptor daf-38 [Caenorhabditis elegans]
|
KAI1730515.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.919|GO:0065007_0.802|GO:0009987_0.739|GO:0050789_0.739|GO:0005575_0.728|GO:0110165_0.728|GO:0050794_0.698|GO:0003674_0.627|GO:0016020_0.626|GO:0050896_0.620|GO:0051716_0.593|GO:0023052_0.571|GO:0007154_0.568|GO:0007165_0.541|GO:0071944_0.516|GO:0005886_0.508
|
IPR000276+72-209_81-102_126-148_163-184_255-278_769-793_808-834+|IPR017452+56-826+
|
— |
PF00001+72-209+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24230+25-829+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23;380-430;503-555;842-857
|
3.000
|
24-379;431-502;556-841
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
95335.660
|
9.487
|
40.500
|
21.120
|
10.852
|
48.191
|
51.809
|
13.652
|
7.468
|
53.326
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
187.607
|
212.187
|
492.813
|
166.095
|
52.970
|
76.375
|
151.542
|
414.184
|
75.659
|
176.722
|
133.410
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.988
|
-0.491
|
-1.462
|
-1.684
|
0.543
|
0.999
|
2.340
|
-1.310
|
— | — | — | — | — |
No JSON data available for plots.