SCN Proteipedia

Hg_chrom4_TN10mRNA_7511

Organism: Heterodera glycines Gene Locus: chr4:4192075-4199019 Feature type: polypeptide

Protein Sequence

Length: 855

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.816	1.414	0.744	0.968	0.565	1.05	0.724	1.462	1.04	1.438	0.496	1.307	1.137	1.08	1.528	1.504	1.055	0.709	1.17	0.688	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7099	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.506

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRLMVERRRARRSNK,KRFGLPPTMERRERRKMP,RRERRKMPLSHKQTRPGRAR	68-88	0.999	—	—	—	—	0.000	—	—	0.074	0.064	0.025	0.132	0.285	0.256	0.143	0.085	0.810	0.077

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003799	2.000	1.000	Hsc_gene_9988.t1	Hsc_gene_9988.t1	—	Q9U320.1 G-protein coupled receptor daf-38 [Caenorhabditis elegans]	KAI1730515.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0008150_0.921\|GO:0065007_0.783\|GO:0009987_0.742\|GO:0005575_0.728\|GO:0110165_0.728\|GO:0050789_0.720\|GO:0050794_0.679\|GO:0050896_0.626\|GO:0016020_0.625\|GO:0003674_0.606\|GO:0051716_0.599\|GO:0023052_0.553\|GO:0007154_0.550\|GO:0007165_0.525\|GO:0032501_0.519\|GO:0071944_0.515\|GO:0005886_0.504	IPR000276+79-100_81-207_124-146_161-182_253-276_767-791_806-832+\|IPR017452+56-824+	—	PF00001+81-207+7_transmembrane_receptor_(rhodopsin_family)	—	PTHR24230+25-827+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-23;378-428;501-553;840-855	3.000	24-377;429-500;554-839	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.944	95105.340	9.487	40.500	21.170	10.877	48.304	51.696	13.684	7.485	53.333

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	turquoise	187.607	212.187	492.813	166.095	52.970	76.375	151.542	414.184	75.659	176.722	133.410

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.988	-0.491	-1.462	-1.684	0.543	0.999	2.340	-1.310	—	—	—	—	—

No JSON data available for plots.

Back to Browser