Hg_chrom4_TN10mRNA_7512
Organism: Heterodera glycines Gene Locus: chr4:4201962-4207500 Feature type: polypeptideProtein Sequence
Length: 669
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.921 | 1.425 | 0.462 | 0.928 | 0.797 | 1.15 | 0.765 | 1.42 | 1.229 | 1.515 | 0.521 | 1.055 | 1.412 | 0.891 | 1.403 | 1.217 | 0.882 | 0.838 | 1.38 | 0.703 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7100
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
WHRASNRRGRRSAKTRN
|
36-77
|
0.966
|
31-63
|
1.000
|
— | — |
0.000
|
— | — |
0.083
|
0.127
|
0.018
|
0.090
|
0.197
|
0.249
|
0.175
|
0.074
|
0.712
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008402
|
1.000
|
1.000
|
Hsc_gene_9990.t1
|
Hsc_gene_9990.t1
|
— | — |
KAI1707957.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.908|GO:0065007_0.846|GO:0009987_0.845|GO:0050789_0.794|GO:0003674_0.784|GO:0050794_0.776|GO:0005575_0.765|GO:0110165_0.765|GO:0050896_0.721|GO:0016020_0.712|GO:0051716_0.695|GO:0007154_0.689|GO:0023052_0.688|GO:0007165_0.659|GO:0071944_0.566|GO:0005886_0.558|GO:0038023_0.540|GO:0060089_0.540|GO:0007186_0.533|GO:0005488_0.506
|
IPR000276+71-200_73-94_118-140_154-175_231-665_237-260_607-631_647-669+|IPR017452+40-665+
|
— |
PF00001+71-200_231-665+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24230+16-666+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
295-431
|
2.000
|
1-294;432-669
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.916
|
74822.920
|
9.353
|
29.500
|
20.478
|
12.108
|
44.993
|
55.007
|
13.154
|
7.324
|
49.776
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
207.280
|
122.874
|
230.141
|
125.194
|
77.799
|
86.382
|
331.984
|
244.233
|
122.429
|
358.050
|
257.070
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
— |
-0.771
|
-0.719
|
— |
1.953
|
1.399
|
0.584
|
— | — | — | — | — |
No JSON data available for plots.