Hg_chrom4_TN10mRNA_7514
Organism: Heterodera glycines Gene Locus: chr4:4209696-4210242 Feature type: polypeptideProtein Sequence
Length: 86
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 0.541 | 1.057 | 0.0 | 2.907 | 1.491 | 0.692 | 1.163 | 0.517 | 0.629 | 1.938 | 2.052 | 0.969 | 1.118 | 0.949 | 0.498 | 0.572 | 0.352 | 2.683 | 0.684 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7102
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.728
|
0.486
|
0.013
|
0.542
|
0.051
|
0.021
|
0.036
|
0.009
|
0.051
|
0.276
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008404
|
1.000
|
1.000
|
Hsc_gene_9992.t1
|
Hsc_gene_9992.t1
|
— | — |
KAF7637022.1 HMG box domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.706|GO:0005488_0.706|GO:0005575_0.699|GO:0110165_0.689|GO:0008150_0.677|GO:0005622_0.638|GO:0009987_0.633|GO:0043226_0.585|GO:0016020_0.572|GO:0043229_0.566|GO:0065007_0.514|GO:0050789_0.503
|
IPR009071+4-72_5-67_5-71+|IPR036910+1-86_3-69+
|
SM00398+4-72+
|
PF00505+5-67+HMG_(high_mobility_group)_box
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-86
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
10138.260
|
4.812
|
-4.000
|
43.023
|
11.628
|
58.140
|
41.860
|
19.767
|
23.256
|
37.209
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
264.587
|
2845.791
|
93.213
|
31.791
|
8.058
|
3.523
|
29.426
|
10.243
|
0.000
|
24.302
|
13.887
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.162
|
-6.621
|
-1.441
|
-2.022
|
— |
3.079
|
1.446
|
1.667
|
— |
5.847
|
— | — | — |
No JSON data available for plots.