SCN Proteipedia

Hg_chrom4_TN10mRNA_7515

Organism: Heterodera glycines Gene Locus: chr4:4214993-4223849 Feature type: polypeptide

Protein Sequence

Length: 1,154

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.736	1.048	0.914	0.448	1.199	0.911	0.629	1.256	1.348	1.323	1.063	2.294	1.228	0.667	1.22	1.065	0.753	0.998	0.733	1.198	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7103	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRRR,PNIKRMK,LKSHKKAKKVVKDDEKKTAGGRRDDKEEREKDKDREKDREREKRRRTRDKER	1-35	0.964	—	—	—	—	0.002	—	—	0.087	0.072	0.015	0.295	0.299	0.490	0.245	0.030	0.830	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008405	1.000	1.000	Hsc_gene_9993.t1	Hsc_gene_9993.t1	—	E7EAU8.1 Receptor-type guanylate cyclase gcy-9 [Caenorhabditis elegans]	KAI1709792.1 adenylate and guanylate cyclase catalytic domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468\|GO:0009190\|GO:0016849\|GO:0035556	GO:0008150_0.962\|GO:0005575_0.870\|GO:0110165_0.851\|GO:0009987_0.743\|GO:0016020_0.728\|GO:0050896_0.711\|GO:0032501_0.698\|GO:0071944_0.645\|GO:0005886_0.637\|GO:0043226_0.577\|GO:0005622_0.573\|GO:0065007_0.571\|GO:0003674_0.542\|GO:0050789_0.519	IPR000719+513-893_513-897+\|IPR001054+933-1136_963-1147_969-1099_969-1145+\|IPR001245+550-679+\|IPR001828+60-397+\|IPR011009+555-893+\|IPR018297+1076-1099+\|IPR028082+42-458+\|IPR029787+955-1145_957-1148+\|IPR050401+142-1150+	SM00044+933-1136+\|SM00220+513-893+	PF00211+963-1147+Adenylate_and_Guanylate_cyclase_catalytic_domain\|PF01094+60-397+Receptor_family_ligand_binding_region\|PF07714+550-679+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:3.30.70.1230:FF:000050+929-1151+Guanylate_cyclase	PTHR11920+142-1150+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	696-777	2.000	1-695;778-1154	8fx4_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.695	132050.130	8.447	23.500	27.730	11.958	47.834	52.166	15.511	12.218	44.541

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	709.348	450.854	1157.506	436.821	149.142	106.549	129.420	326.927	61.537	2023.290	1182.538

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.131	-0.183	-1.297	-1.581	-0.471	0.292	1.512	-1.193	-5.203	—	-3.497	—	—

No JSON data available for plots.

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