Hg_chrom4_TN10mRNA_7521
Organism: Heterodera glycines Gene Locus: chr4:4231005-4232108 Feature type: polypeptideProtein Sequence
Length: 182
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.278 | 1.399 | 2.084 | 0.733 | 1.268 | 1.047 | 1.374 | 1.099 | 0.817 | 0.999 | 2.909 | 1.374 | 0.634 | 0.897 | 1.256 | 0.721 | 0.416 | 0.423 | 0.323 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7107
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular|endoplasmic_reticulum
|
— | — | — | — | — | — |
1-25
|
0.944
|
1.000
|
0.000
|
0.000
|
0.151
|
0.451
|
0.013
|
0.242
|
0.648
|
0.235
|
0.133
|
0.057
|
0.451
|
0.694
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008408
|
1.000
|
1.000
|
Hsc_gene_9997.t2
|
Hsc_gene_9997.t1;Hsc_gene_9997.t2
|
— | — |
KAI3418716.1 hypothetical protein GPALN_007823 [Globodera pallida]
|
HNH84142
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
142-182
|
1.000
|
1-141
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
19962.600
|
6.605
|
0.500
|
25.824
|
9.341
|
49.451
|
50.549
|
13.736
|
12.088
|
54.396
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1042.417
|
496.846
|
1137.328
|
744.209
|
495.328
|
750.755
|
796.998
|
1116.173
|
334.524
|
2233.067
|
1419.406
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.966
|
0.446
|
-0.504
|
-0.620
|
0.615
|
— |
0.471
|
-0.345
|
-2.873
|
— | — | — | — |