Hg_chrom4_TN10mRNA_7525
Organism: Heterodera glycines Gene Locus: chr4:4246681-4250713 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.16 | 1.042 | 0.889 | 0.702 | 1.052 | 1.044 | 1.067 | 1.426 | 1.313 | 0.853 | 0.895 | 1.917 | 1.188 | 0.94 | 0.956 | 0.582 | 0.935 | 1.203 | 0.94 | 0.659 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7111
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.397
|
0.391
|
0.084
|
0.608
|
0.213
|
0.281
|
0.146
|
0.231
|
0.099
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008412
|
1.000
|
1.000
|
Hsc_gene_10001.t1
|
Hsc_gene_10001.t1
|
— |
Q18677.1 Dihydropyrimidinase 2 [Caenorhabditis elegans]
|
KAI3418729.1 Dihydropyrimidinase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737|GO:0016787|GO:0016810
|
GO:0008150_0.862|GO:0003674_0.739|GO:0005575_0.662|GO:0110165_0.648|GO:0009987_0.608
|
IPR006680+57-447+|IPR011059+4-79_4-479_369-465+|IPR011778+5-460_5-464+|IPR032466+61-393+|IPR050378+3-490+
|
— |
PF01979+57-447+Amidohydrolase_family
|
G3DSA:3.20.20.140:FF:000001+61-434+Dihydropyrimidinase_like_3
|
PTHR11647+3-490+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
488-491
|
1.000
|
1-487
|
2vr2_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
53770.540
|
6.981
|
4.000
|
24.644
|
10.591
|
42.974
|
57.026
|
13.442
|
11.202
|
52.953
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1012.297
|
755.859
|
2408.919
|
617.996
|
866.163
|
1853.641
|
1756.654
|
1367.425
|
242.402
|
637.003
|
467.888
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.444
|
-0.428
|
-1.855
|
0.455
|
1.111
|
— |
-0.542
|
0.503
|
— | — | — | — | — |
No JSON data available for plots.