Hg_chrom4_TN10mRNA_7530
Organism: Heterodera glycines Gene Locus: chr4:4263476-4265934 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.2 | 1.05 | 0.762 | 0.667 | 1.129 | 0.744 | 1.075 | 2.419 | 1.434 | 1.351 | 0.88 | 2.277 | 0.358 | 0.682 | 0.658 | 0.922 | 0.635 | 0.831 | 0.993 | 1.233 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7116
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.552
|
0.270
|
0.011
|
0.577
|
0.371
|
0.067
|
0.156
|
0.058
|
0.089
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008417
|
1.000
|
1.000
|
Hsc_gene_10006.t1
|
Hsc_gene_10006.t1;Hsc_gene_10007.t1
|
— |
Q20952.1 Adducin-related protein 2 [Caenorhabditis elegans]
|
KAI1724589.1 adducin-related protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.898|GO:0005575_0.785|GO:0110165_0.776|GO:0009987_0.756|GO:0003674_0.681|GO:0071840_0.616|GO:0016043_0.610|GO:0005622_0.609|GO:0006996_0.585|GO:0016020_0.579|GO:0007010_0.578|GO:0043226_0.549|GO:0032501_0.515
|
IPR001303+36-217_37-217+|IPR036409+23-293_31-238+|IPR051017+14-305+
|
SM01007+36-217+
|
PF00596+37-217+Class_II_Aldolase_and_Adducin_N-terminal_domain
|
G3DSA:3.40.225.10:FF:000013+23-293+Class_II_aldolase
|
PTHR10672+14-305+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-310
|
3ocr_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
33901.810
|
6.660
|
1.500
|
24.839
|
11.613
|
42.581
|
57.419
|
13.871
|
10.968
|
49.355
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
2206.983
|
1629.219
|
813.879
|
2817.940
|
4776.518
|
3146.281
|
6171.845
|
980.028
|
51.479
|
1991.049
|
1159.805
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.235
|
0.654
|
1.904
|
0.730
|
-0.588
|
0.982
|
-1.801
|
2.803
|
-5.408
|
5.961
|
— | — | — |
No JSON data available for plots.