Hg_chrom4_TN10mRNA_7531
Organism: Heterodera glycines Gene Locus: chr4:4266089-4268007 Feature type: polypeptideProtein Sequence
Length: 331
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.124 | 1.616 | 0.824 | 0.625 | 1.611 | 0.775 | 0.719 | 1.813 | 0.739 | 1.347 | 1.373 | 1.599 | 1.846 | 0.349 | 0.493 | 0.906 | 0.396 | 1.053 | 1.162 | 0.444 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7117
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
FKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.532
|
0.150
|
0.019
|
0.609
|
0.123
|
0.150
|
0.103
|
0.015
|
0.203
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008418
|
1.000
|
1.000
|
Hsc_gene_10008.t1
|
Hsc_gene_10008.t1
|
— | — |
KAI3417518.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.801|GO:0009987_0.737|GO:0032501_0.598|GO:0032502_0.591|GO:0048856_0.591|GO:0048869_0.565|GO:0030154_0.564|GO:0048468_0.563|GO:0065007_0.513
|
IPR000210+165-233_165-263_168-262+|IPR002083+26-131_45-133+|IPR008974+8-160+|IPR011333+166-292_169-261+
|
SM00061+26-131+|SM00225+165-263+
|
PF00651+168-262+BTB/POZ_domain|PF00917+45-133+MATH_domain
|
— |
PTHR47022+23-292+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13
|
1.000
|
14-331
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
37201.350
|
6.090
|
-3.000
|
29.305
|
13.293
|
48.036
|
51.964
|
15.106
|
14.199
|
46.526
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
cyan
|
91.166
|
118.930
|
86.097
|
51.132
|
24.564
|
95.675
|
494.125
|
27.585
|
0.000
|
62.063
|
35.465
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.697
|
-1.355
|
-0.641
|
-1.087
|
1.974
|
2.378
|
-1.901
|
4.306
|
— |
6.533
|
— | — | — |
No JSON data available for plots.