Hg_chrom4_TN10mRNA_7535
Organism: Heterodera glycines Gene Locus: chr4:4286789-4291079 Feature type: polypeptideProtein Sequence
Length: 489
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.165 | 0.856 | 0.409 | 0.846 | 0.682 | 0.472 | 0.657 | 0.716 | 1.863 | 1.907 | 0.403 | 1.564 | 2.045 | 0.629 | 0.835 | 1.256 | 0.738 | 1.177 | 1.258 | 1.022 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7121
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.795
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.043
|
0.155
|
0.012
|
0.144
|
0.430
|
0.624
|
0.517
|
0.021
|
0.464
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003801
|
2.000
|
1.000
|
Hsc_gene_10012.t1
|
Hsc_gene_10012.t1;Hsc_gene_16865.t1;Hsc_gene_17737.t1
|
— |
Q22397.2 Amino acid transporter protein 6 [Caenorhabditis elegans]
|
KAI3418735.1 Amino acid permease [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.859|GO:0005575_0.817|GO:0110165_0.816|GO:0016020_0.786|GO:0009987_0.777|GO:0005886_0.765|GO:0071944_0.765|GO:0051179_0.760|GO:0006810_0.758|GO:0051234_0.758|GO:0055085_0.704|GO:0003674_0.674|GO:0005215_0.558|GO:0022857_0.558|GO:0003333_0.555|GO:0006865_0.555|GO:0071705_0.524
|
IPR002293+20-430+|IPR050598+13-483+
|
— |
PF13520+20-430+Amino_acid_permease
|
G3DSA:1.20.1740.10:FF:000058+15-464+Amino_Acid_Transporter
|
PTHR11785+13-483+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-489
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
54088.950
|
7.718
|
5.500
|
14.519
|
13.906
|
33.333
|
66.667
|
8.180
|
6.339
|
48.262
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
317.131
|
27.894
|
99.271
|
550.393
|
221.516
|
301.148
|
121.225
|
33.311
|
9.675
|
872.158
|
502.522
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.602
|
4.165
|
2.579
|
-1.347
|
0.457
|
-1.301
|
-3.275
|
2.005
|
-6.629
|
6.016
|
— | — | — |
No JSON data available for plots.