SCN Proteipedia

Hg_chrom4_TN10mRNA_7536

Organism: Heterodera glycines Gene Locus: chr4:4292058-4300460 Feature type: polypeptide

Protein Sequence

Length: 1,246

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.008	0.933	0.569	1.024	0.896	1.441	0.822	1.124	1.088	1.128	0.572	1.558	1.382	0.88	1.31	1.101	1.276	0.961	0.864	0.732	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7122	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-ppJ2_pJ2	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KKPR	—	—	—	—	—	—	0.000	—	—	0.069	0.065	0.019	0.096	0.285	0.306	0.417	0.005	0.917	0.054

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008420	1.000	1.000	Hsc_gene_10013.t2	Hsc_gene_10013.t1;Hsc_gene_10013.t2	—	P41594.2 Metabotropic glutamate receptor 5 [Homo sapiens]	KAI1713584.1 receptor family ligand binding region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0008150_0.969\|GO:0005575_0.928\|GO:0110165_0.928\|GO:0009987_0.911\|GO:0065007_0.882\|GO:0050789_0.862\|GO:0003674_0.841\|GO:0050794_0.813\|GO:0071944_0.780\|GO:0005886_0.774\|GO:0016020_0.774\|GO:0050896_0.772\|GO:0007154_0.750\|GO:0023052_0.749\|GO:0005488_0.742\|GO:0051716_0.720\|GO:0007165_0.671\|GO:0060089_0.633\|GO:0038023_0.630\|GO:0030054_0.628\|GO:0004888_0.627\|GO:0005622_0.627\|GO:0036094_0.617\|GO:0043167_0.614\|GO:0007186_0.607\|GO:0010646_0.586\|GO:0023051_0.584\|GO:0007166_0.581\|GO:0045202_0.578\|GO:0043168_0.576\|GO:0004930_0.575\|GO:0032501_0.570\|GO:0008066_0.563\|GO:0016595_0.563\|GO:0016597_0.563\|GO:0031406_0.563\|GO:0043177_0.563\|GO:0007267_0.553\|GO:0007215_0.529\|GO:0007216_0.529\|GO:0099536_0.525\|GO:0099537_0.525\|GO:0007268_0.523\|GO:0098916_0.523	IPR000337+34-46_63-78_132-158_165-184_184-200_200-217_649-671_694-715_735-758_789-812_812-833+\|IPR001828+72-280_319-513+\|IPR011500+549-599+\|IPR017978+619-864_621-884+\|IPR017979+811-821+\|IPR028082+35-555+\|IPR038550+548-621+\|IPR050726+29-884+	—	PF00003+619-864+7_transmembrane_sweet-taste_receptor_of_3_GCPR\|PF01094+72-280_319-513+Receptor_family_ligand_binding_region\|PF07562+549-599+Nine_Cysteines_Domain_of_family_3_GPCR	—	PTHR24060+29-884+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	930-1246	1.000	1-929	4or2_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.816	137914.670	8.536	35.000	20.947	10.835	46.067	53.933	12.440	8.507	52.087

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	321.850	206.555	555.279	451.762	188.347	111.724	269.186	163.468	349.902	415.797	387.557

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.198	0.992	-0.189	-1.294	-0.739	1.279	—	0.861	—	—	—	—	—

No JSON data available for plots.

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