Hg_chrom4_TN10mRNA_7538
Organism: Heterodera glycines Gene Locus: chr4:4307532-4310591 Feature type: polypeptideProtein Sequence
Length: 382
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 1.339 | 0.619 | 0.361 | 1.353 | 1.342 | 0.717 | 0.262 | 0.756 | 0.955 | 1.507 | 1.54 | 0.873 | 1.611 | 1.603 | 2.019 | 0.858 | 0.159 | 0.604 | 0.308 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7124
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
chloroplast
|
KKKQQQNVEEEKDKEKER,RRMDRLFRSRSSTDERRRN,MPKSKSNKKREEKEEEKGQEKPKKEQTQPKGGKNLMRLWKLAKNKALGEKK
|
41-82
|
0.983
|
69-103
|
1.000
|
1-27
|
0.972
|
0.800
|
0.000
|
0.000
|
0.415
|
0.123
|
0.039
|
0.554
|
0.121
|
0.107
|
0.063
|
0.011
|
0.594
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008422
|
1.000
|
1.000
|
Hsc_gene_10015.t1
|
Hsc_gene_10015.t1
|
— | — | — |
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
65-382
|
1.000
|
1-64
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.947
|
42610.850
|
10.639
|
25.000
|
29.843
|
5.497
|
60.209
|
39.791
|
18.325
|
11.518
|
50.262
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
687.055
|
22.167
|
173.315
|
403.233
|
104.042
|
12.963
|
96.119
|
26.200
|
2666.999
|
691.351
|
1538.057
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.736
|
4.048
|
1.328
|
-1.985
|
-2.989
|
2.898
|
0.911
|
2.018
|
1.854
|
-2.590
|
-2.503
|
— | — |