Hg_chrom4_TN10mRNA_7540
Organism: Heterodera glycines Gene Locus: chr4:4314051-4314596 Feature type: polypeptideProtein Sequence
Length: 80
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 0.581 | 0.909 | 0.0 | 3.125 | 2.244 | 0.298 | 0.625 | 0.278 | 0.338 | 1.515 | 2.206 | 1.389 | 1.202 | 1.02 | 1.071 | 0.41 | 0.379 | 2.885 | 0.368 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7126
|
— | — |
2.222
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.708
|
0.445
|
0.015
|
0.514
|
0.040
|
0.036
|
0.030
|
0.004
|
0.059
|
0.508
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003802
|
2.000
|
1.000
|
Hsc_gene_10017.t1
|
Hsc_gene_10017.t1;Hsc_gene_10030.t1
|
— | — |
XP_045613240.1 FACT complex subunit Ssrp1-like [Procambarus clarkii]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.715|GO:0110165_0.705|GO:0003674_0.694|GO:0005488_0.694|GO:0005622_0.643|GO:0008150_0.641|GO:0009987_0.599|GO:0043226_0.589|GO:0016020_0.587|GO:0043229_0.563|GO:0043227_0.508
|
IPR009071+4-72_5-68_5-71+|IPR036910+1-80_2-69+
|
SM00398+4-72+
|
PF00505+5-68+HMG_(high_mobility_group)_box
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-80
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
9462.350
|
4.410
|
-6.500
|
40.000
|
11.250
|
61.250
|
38.750
|
16.250
|
23.750
|
38.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
180.048
|
1322.851
|
138.538
|
33.131
|
11.282
|
4.519
|
10.972
|
207.849
|
24.270
|
121.078
|
79.589
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.487
|
-5.457
|
-1.952
|
-1.584
|
-1.307
|
1.295
|
5.423
|
-4.101
|
— | — | — | — | — |
No JSON data available for plots.