Hg_chrom4_TN10mRNA_7541
Organism: Heterodera glycines Gene Locus: chr4:4316943-4318869 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.264 | 0.889 | 0.75 | 1.359 | 1.254 | 0.421 | 0.679 | 1.389 | 1.836 | 0.988 | 0.959 | 1.283 | 0.575 | 0.776 | 1.281 | 0.713 | 1.153 | 0.209 | 0.48 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7127
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKGSQQELLDEMTLRKKKD
|
— | — | — | — | — | — |
0.001
|
— | — |
0.237
|
0.867
|
0.063
|
0.240
|
0.272
|
0.039
|
0.054
|
0.370
|
0.083
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003803
|
1.000
|
2.000
|
Hsc_gene_10018.t1;Hsc_gene_9986.t1
|
— | — |
P54815.2 Mitochondrial sorting homolog [Caenorhabditis elegans]
|
KAF7637223.1 AAA domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.898|GO:0110165_0.890|GO:0005622_0.842|GO:0008150_0.773|GO:0005737_0.696|GO:0043226_0.687|GO:0043229_0.668|GO:0016020_0.658|GO:0009987_0.629|GO:0043227_0.553|GO:0043231_0.517
|
IPR003593+121-252+|IPR003959+125-250+|IPR027417+81-348_83-308+|IPR051701+42-323+
|
SM00382+121-252+
|
PF00004+125-250+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
— |
PTHR45644+42-323+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-368
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
41036.250
|
4.958
|
-7.500
|
24.728
|
7.880
|
48.370
|
51.630
|
11.685
|
13.043
|
47.283
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
834.260
|
41.122
|
104.367
|
173.775
|
874.238
|
1940.162
|
834.220
|
1438.828
|
35.099
|
1596.045
|
927.068
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.111
|
1.941
|
0.846
|
2.300
|
1.165
|
-1.208
|
— |
-0.640
|
-5.636
|
— | — | — | — |
No JSON data available for plots.