Hg_chrom4_TN10mRNA_7545
Organism: Heterodera glycines Gene Locus: chr4:4331406-4335976 Feature type: polypeptideProtein Sequence
Length: 870
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.949 | 1.23 | 0.752 | 1.982 | 1.111 | 1.297 | 0.78 | 1.149 | 0.664 | 0.777 | 0.836 | 0.879 | 1.628 | 0.685 | 1.877 | 0.952 | 1.036 | 0.592 | 1.857 | 0.71 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7131
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.563
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
RKGFAGSGFNCTKNRRI,RKCHPDFRLSAVFQSERKK,RRQRMQRLKAKLVKGRRKE
|
62-89
|
0.956
|
— | — |
1-23
|
0.991
|
0.996
|
0.000
|
0.000
|
0.234
|
0.121
|
0.036
|
0.248
|
0.094
|
0.090
|
0.177
|
0.108
|
0.229
|
0.777
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008425
|
1.000
|
1.000
|
Hsc_gene_10022.t1
|
— | — |
P00980.1 Kunitz-type serine protease inhibitor homolog alpha-dendrotoxin [Dendroaspis angusticeps]
|
KAI3418749.1 KU [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005509
|
GO:0008150_0.769|GO:0003674_0.728|GO:0005575_0.717|GO:0110165_0.717|GO:0005488_0.592|GO:0009987_0.569|GO:0005515_0.509
|
IPR000152+170-181+|IPR000742+123-154_155-193_158-193_179-192+|IPR001881+120-154_155-193+|IPR002223+45-59_46-99_47-98_48-98_73-83_83-98_197-258_199-257_210-257_286-352_288-351_488-547_490-546_501-547_585-645_587-644_601-644+|IPR018097+155-179+|IPR020901+76-94+|IPR024731+163-192+|IPR036880+41-100_42-100_191-259_194-266_274-363_283-352_479-556_488-546_577-646_587-645+|IPR050098+218-549+
|
SM00131+46-99_197-258_286-352_488-547_585-645+|SM00179+120-154_155-193+|SM00181+123-154_158-193+
|
PF00014+47-98_210-257_501-547_601-644+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain|PF12947+163-192+EGF_domain
|
G3DSA:2.10.25.10:FF:000038+150-193+Fibrillin_2
|
PTHR10083+218-549+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
764-829
|
2.000
|
1-763;830-870
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
99523.340
|
8.744
|
44.000
|
27.816
|
12.989
|
51.149
|
48.851
|
17.011
|
10.805
|
50.345
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
magenta
|
486.078
|
195.099
|
652.571
|
360.340
|
626.521
|
784.741
|
604.159
|
296.157
|
55.181
|
765.359
|
460.997
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.512
|
0.748
|
-0.748
|
0.765
|
0.339
|
-0.367
|
-1.512
|
1.170
|
— | — | — | — | — |