Hg_chrom4_TN10mRNA_7546
Organism: Heterodera glycines Gene Locus: chr4:4336398-4338858 Feature type: polypeptideProtein Sequence
Length: 427
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.089 | 0.926 | 1.192 | 0.404 | 0.82 | 1.201 | 0.864 | 2.225 | 1.145 | 1.456 | 0.639 | 0.827 | 1.171 | 1.036 | 1.338 | 0.703 | 0.806 | 0.887 | 1.801 | 0.551 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7132
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— | — |
46-67
|
0.980
|
— | — | — | — |
0.006
|
— | — |
0.262
|
0.303
|
0.015
|
0.268
|
0.124
|
0.146
|
0.094
|
0.760
|
0.089
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008426
|
1.000
|
1.000
|
Hsc_gene_10023.t1
|
Hsc_gene_10023.t1
|
— |
Q18006.2 Putative sarcosine oxidase [Caenorhabditis elegans]
|
KAI1700159.1 FAD dependent oxidoreductase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491|GO:0050660
|
GO:0005575_0.760|GO:0110165_0.744|GO:0003674_0.723|GO:0005622_0.681|GO:0003824_0.650|GO:0005737_0.644|GO:0016020_0.597|GO:0008150_0.594|GO:0043226_0.549|GO:0009987_0.528|GO:0016491_0.528|GO:0043229_0.526|GO:0043227_0.515|GO:0043231_0.515
|
IPR006076+11-398+|IPR036188+9-418_11-403+|IPR045170+9-417+
|
— |
PF01266+11-398+FAD_dependent_oxidoreductase
|
— |
PTHR10961+9-417+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-427
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
47830.380
|
7.147
|
6.500
|
26.698
|
12.881
|
45.199
|
54.801
|
15.222
|
11.475
|
49.415
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
violet
|
929.609
|
250.506
|
766.765
|
939.428
|
902.236
|
1034.095
|
1790.899
|
564.158
|
521.646
|
1332.772
|
985.146
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.386
|
1.770
|
0.401
|
— |
0.212
|
0.803
|
-0.978
|
1.809
|
— | — | — | — | — |
No JSON data available for plots.