Hg_chrom4_TN10mRNA_7547
Organism: Heterodera glycines Gene Locus: chr4:4340999-4344714 Feature type: polypeptideProtein Sequence
Length: 513
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.453 | 1.451 | 1.028 | 0.672 | 1.527 | 1.649 | 0.487 | 1.462 | 1.256 | 1.106 | 1.152 | 1.261 | 0.975 | 1.125 | 1.591 | 0.724 | 0.543 | 0.886 | 1.2 | 0.917 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7133
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.934
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRDVRLPLYQPYKDRRE,RREKMEVWSEQKRKRKAD,KRKRKADEENEEEERQNKR,RKCHTFVPPSGNHIKRKSE
|
42-66
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.865
|
0.125
|
0.007
|
0.321
|
0.028
|
0.019
|
0.015
|
0.001
|
0.062
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008427
|
1.000
|
1.000
|
Hsc_gene_10024.t1
|
— | — | — |
KAI3411011.1 hypothetical protein GPALN_003095 [Globodera pallida]
|
MDB4939863
|
0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
151-241
|
2.000
|
1-150;242-513
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
60355.540
|
8.019
|
10.500
|
33.138
|
11.111
|
54.191
|
45.809
|
18.324
|
14.815
|
41.910
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightcyan
|
776.451
|
652.796
|
586.711
|
510.396
|
712.412
|
612.610
|
1171.610
|
497.878
|
455.195
|
1276.420
|
924.467
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.384
|
-0.492
|
— |
0.450
|
— |
0.946
|
-0.403
|
1.377
|
— | — | — | — | — |
No JSON data available for plots.