Hg_chrom4_TN10mRNA_7551
Organism: Heterodera glycines Gene Locus: chr4:4358177-4360414 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.533 | 1.067 | 0.334 | 1.107 | 1.376 | 1.294 | 0.273 | 1.376 | 1.631 | 1.178 | 0.834 | 1.889 | 2.166 | 1.147 | 0.936 | 1.704 | 1.053 | 0.417 | 1.764 | 0.27 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7137
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
48-84
|
0.872
|
42-78
|
0.983
|
— | — |
0.001
|
— | — |
0.418
|
0.158
|
0.072
|
0.538
|
0.180
|
0.045
|
0.116
|
0.028
|
0.106
|
0.459
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003802
|
2.000
|
1.000
|
Hsc_gene_10017.t1
|
Hsc_gene_10017.t1;Hsc_gene_10030.t1
|
— | — |
CAB3398962.1 unnamed protein product [Caenorhabditis bovis]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.806|GO:0110165_0.806|GO:0016020_0.774|GO:0008150_0.760|GO:0005622_0.741|GO:0009987_0.732|GO:0043226_0.718|GO:0043229_0.697|GO:0043227_0.672|GO:0043231_0.666|GO:0003674_0.636|GO:0005488_0.592
|
IPR009071+142-210_143-206_143-209+|IPR036910+129-218_137-207+|IPR050342+124-214+
|
SM00398+142-210+
|
PF00505+143-206+HMG_(high_mobility_group)_box
|
— |
PTHR48112+124-214+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
187-218
|
1.000
|
1-186
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
25168.920
|
7.308
|
3.000
|
22.936
|
13.761
|
50.917
|
49.083
|
12.844
|
10.092
|
43.578
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
279.558
|
889.836
|
260.136
|
119.720
|
39.300
|
17.727
|
8.809
|
162.947
|
84.667
|
597.637
|
377.793
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.007
|
-3.031
|
-1.009
|
-1.636
|
-1.135
|
-0.997
|
3.093
|
-4.066
|
— | — |
-3.730
|
— | — |
No JSON data available for plots.