SCN Proteipedia

Hg_chrom4_TN10mRNA_7552

Organism: Heterodera glycines Gene Locus: chr4:4365420-4368849 Feature type: polypeptide

Protein Sequence

Length: 434

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.206	1.447	0.838	0.397	0.845	2.54	0.795	1.037	0.614	1.09	0.559	0.678	1.28	1.418	1.223	1.152	1.209	0.489	0.709	0.203	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7138	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	RKGGRPASDTTTKRRRTRT	—	—	—	—	—	—	0.000	—	—	0.870	0.108	0.010	0.346	0.043	0.050	0.055	0.040	0.051	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008431	1.000	1.000	Hsc_gene_10031.t1	Hsc_gene_10031.t1	—	P29506.2 Homeobox protein unc-4 [Caenorhabditis elegans]	XP_042933921.1 Homeobox protein unc-4-like [Brugia malayi];VIO92907.1 Homeobox protein unc-4-like [Brugia malayi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.879\|GO:0009987_0.797\|GO:0032501_0.780\|GO:0032502_0.720\|GO:0048856_0.720\|GO:0065007_0.649\|GO:0007275_0.643\|GO:0050789_0.637\|GO:0050794_0.634\|GO:0005575_0.621\|GO:0003674_0.620\|GO:0005488_0.620\|GO:0048731_0.607\|GO:0097159_0.601\|GO:0003676_0.600\|GO:0048513_0.595\|GO:0110165_0.582\|GO:0008152_0.557\|GO:0019222_0.557\|GO:0031323_0.557\|GO:0044237_0.557\|GO:0009058_0.553\|GO:0009059_0.553\|GO:0010467_0.553\|GO:0043170_0.553\|GO:0044249_0.553\|GO:0003677_0.552\|GO:0043565_0.552\|GO:0060255_0.549\|GO:0009889_0.547\|GO:0031326_0.547\|GO:0010556_0.541\|GO:0010468_0.539\|GO:0043226_0.532\|GO:0005622_0.527\|GO:0044238_0.523\|GO:0080090_0.523\|GO:0003690_0.518\|GO:1990837_0.518\|GO:0043229_0.513\|GO:0006139_0.511\|GO:0016070_0.511\|GO:0090304_0.511\|GO:0032774_0.508\|GO:0034654_0.508\|GO:0141187_0.508\|GO:0019219_0.503\|GO:0051252_0.503	IPR001356+250-310_252-314_253-309_258-311+\|IPR009057+247-311+\|IPR017970+285-308+	SM00389+252-314+	PF00046+253-309+Homeodomain	G3DSA:1.10.10.60:FF:000057+250-315+Short_stature_homeobox_2	PTHR46799+147-316+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-10;70-434	1.000	11-69	9d9v_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.860	47396.490	7.458	4.500	21.429	8.295	52.995	47.005	11.751	9.677	55.069

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	brown	67.997	178.120	178.255	72.842	33.850	35.298	122.277	48.517	41.578	15.370	26.602

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.230	-1.428	-1.181	-1.139	—	1.804	—	1.475	—	—	—	—	—

No JSON data available for plots.

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