Hg_chrom4_TN10mRNA_7554
Organism: Heterodera glycines Gene Locus: chr4:4377561-4381957 Feature type: polypeptideProtein Sequence
Length: 604
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 0.809 | 1.204 | 0.628 | 0.966 | 0.934 | 0.867 | 1.49 | 1.141 | 1.052 | 0.778 | 1.558 | 1.978 | 1.019 | 0.946 | 1.23 | 0.76 | 0.828 | 1.783 | 0.779 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7140
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-25
|
0.989
|
1.000
|
0.000
|
0.000
|
0.195
|
0.260
|
0.028
|
0.354
|
0.272
|
0.378
|
0.263
|
0.037
|
0.204
|
0.832
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002060
|
2.000
|
2.000
|
Hsc_gene_10034.t1;Hsc_gene_10034.t2
|
Hsc_gene_10034.t1;Hsc_gene_10034.t2
|
— |
Q9UB00.2 Putative glucosylceramidase 4 [Caenorhabditis elegans]
|
KAI1716646.1 glycosyl hydrolase family 30 TIM-barrel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004348|GO:0006665
|
GO:0008150_0.949|GO:0005575_0.887|GO:0110165_0.887|GO:0003674_0.876|GO:0008152_0.799|GO:0009987_0.785|GO:0003824_0.782|GO:0044238_0.775|GO:0043170_0.736|GO:0016020_0.732|GO:0065007_0.708|GO:0016787_0.705|GO:0050789_0.695|GO:0050896_0.695|GO:0005622_0.688|GO:0005737_0.682|GO:0050794_0.676|GO:0044237_0.674|GO:0005488_0.669|GO:0009058_0.669|GO:0032501_0.667|GO:0051716_0.664|GO:0016798_0.660|GO:0043226_0.651|GO:0043229_0.647|GO:0051179_0.646|GO:0071840_0.646|GO:0005515_0.645|GO:0043227_0.641|GO:0043231_0.641|GO:0006950_0.640|GO:0019538_0.640|GO:0016043_0.638|GO:0051234_0.637|GO:0006810_0.636|GO:0048518_0.631|GO:0023052_0.629|GO:0048519_0.629|GO:0007154_0.626|GO:0044281_0.625|GO:0009056_0.619|GO:1901135_0.619|GO:0007165_0.618|GO:0019222_0.618|GO:0048523_0.617|GO:0060255_0.614|GO:0048583_0.612|GO:0010646_0.611|GO:0065008_0.611|GO:0080090_0.611|GO:0016740_0.610|GO:0023051_0.609|GO:0005576_0.605|GO:0006629_0.605|GO:0009893_0.605|GO:0009966_0.604|GO:0055085_0.604|GO:0006996_0.603|GO:0044085_0.602|GO:0009057_0.601|GO:0010604_0.601|GO:0044248_0.600|GO:0008610_0.599|GO:0044255_0.599|GO:0051128_0.599|GO:0009892_0.598|GO:1901615_0.598|GO:0003008_0.597|GO:0035556_0.597|GO:0051246_0.597|GO:1902531_0.597|GO:0010605_0.596|GO:0022607_0.596|GO:0006811_0.595|GO:0009894_0.594|GO:0034220_0.594|GO:0006066_0.593|GO:0030163_0.593|GO:0070085_0.593|GO:0043933_0.592|GO:0016042_0.591|GO:0065003_0.591|GO:0008202_0.590|GO:0044087_0.590|GO:0050877_0.590|GO:0051248_0.590|GO:0043603_0.589|GO:0044242_0.589|GO:0051129_0.589|GO:0051247_0.589|GO:0061919_0.589|GO:0006643_0.586|GO:0006664_0.586|GO:0006665_0.586|GO:0006672_0.586|GO:0006677_0.586|GO:0006678_0.586|GO:0006680_0.586|GO:0006687_0.586|GO:0006914_0.586|GO:0007033_0.586|GO:0007040_0.586|GO:0008203_0.586|GO:0016125_0.586|GO:0016236_0.586|GO:0019377_0.586|GO:0030149_0.586|GO:0030258_0.586|GO:0030259_0.586|GO:0031333_0.586|GO:0031929_0.586|GO:0032006_0.586|GO:0042176_0.586|GO:0042391_0.586|GO:0043254_0.586|GO:0046466_0.586|GO:0046477_0.586|GO:0046479_0.586|GO:0046514_0.586|GO:0080171_0.586|GO:1901136_0.586|GO:1902652_0.586|GO:1903509_0.586|GO:0005102_0.580|GO:0016757_0.578|GO:0016758_0.578|GO:0004553_0.577|GO:0004348_0.568|GO:0008422_0.568|GO:0015926_0.568|GO:0017042_0.568|GO:0046527_0.568|GO:0005773_0.564|GO:0031090_0.513|GO:0005615_0.511|GO:0098588_0.490|GO:0000323_0.482|GO:0005764_0.479|GO:0005765_0.472|GO:0005774_0.472|GO:0098852_0.472|GO:0071944_0.456|GO:0005886_0.440|GO:0032502_0.369|GO:0048856_0.369|GO:0007275_0.352
|
IPR001139+29-347_50-69_254-271+|IPR017853+128-526+|IPR033452+525-600+|IPR033453+128-341_400-522+
|
— |
PF02055+128-341_400-522+Glycosyl_hydrolase_family_30_TIM-barrel_domain|PF17189+525-600+Glycosyl_hydrolase_family_30_beta_sandwich_domain
|
— |
PTHR11069+29-347+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-604
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
68010.990
|
5.818
|
-7.000
|
25.166
|
15.066
|
45.530
|
54.470
|
12.748
|
12.417
|
50.166
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
turquoise
|
667.965
|
192.544
|
247.369
|
300.302
|
238.424
|
2708.969
|
2737.688
|
645.509
|
80.542
|
210.386
|
154.739
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.504
|
0.389
|
-0.365
|
3.520
|
— |
-2.195
|
2.235
|
— | — | — | — | — |