Hg_chrom4_TN10mRNA_7556
Organism: Heterodera glycines Gene Locus: chr4:4382168-4384640 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 1.001 | 0.435 | 1.485 | 0.718 | 0.981 | 0.456 | 1.914 | 1.276 | 1.035 | 0.942 | 1.407 | 1.329 | 1.196 | 1.758 | 1.025 | 0.863 | 1.015 | 1.104 | 0.704 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7141
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.288
|
0.591
|
0.212
|
0.614
|
0.160
|
0.030
|
0.060
|
0.343
|
0.065
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008433
|
1.000
|
1.000
|
Hsc_gene_10035.t1
|
— | — |
Q9CX98.2 Cytochrome P450 2U1 [Mus musculus]
|
KAI6234266.1 Cytochrome P450-33C9 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.795|GO:0003674_0.695|GO:0009987_0.550|GO:0003824_0.528|GO:0005575_0.515|GO:0110165_0.511
|
IPR001128+13-79_20-37_139-202_144-153_153-164+|IPR002401+9-26_29-55_143-153_153-176+|IPR017972+146-155+|IPR036396+6-100_11-207_105-209+
|
— |
PF00067+13-79_139-202+Cytochrome_P450
|
— |
PTHR24284+8-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
23785.740
|
10.393
|
21.000
|
25.359
|
12.440
|
45.933
|
54.067
|
18.660
|
6.699
|
48.804
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
15.121
|
4.659
|
7.681
|
3.133
|
16.888
|
37.100
|
10.379
|
5.512
|
7.425
|
28.579
|
19.513
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-1.179
|
2.402
|
1.150
|
-1.824
|
-2.846
|
— | — | — | — | — | — |
No JSON data available for plots.