Hg_chrom4_TN10mRNA_7557
Organism: Heterodera glycines Gene Locus: chr4:4385467-4387322 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.758 | 0.53 | 0.77 | 0.899 | 0.651 | 2.088 | 2.288 | 1.14 | 0.869 | 0.44 | 0.592 | 0.958 | 0.633 | 3.257 | 0.731 | 0.698 | 0.481 | 0.839 | 0.251 | 0.479 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7142
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
21-42
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.040
|
0.063
|
0.009
|
0.122
|
0.536
|
0.349
|
0.328
|
0.005
|
0.768
|
0.196
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008434
|
1.000
|
1.000
|
Hsc_gene_10036.t1
|
Hsc_gene_10036.t1
|
— |
P18831.2 Cuticle collagen 6 [Caenorhabditis elegans]
|
KAH7726260.1 CBN-SQT-2 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.932|GO:0005575_0.929|GO:0110165_0.929|GO:0032501_0.843|GO:0032502_0.833|GO:0048856_0.833|GO:0007275_0.811|GO:0071944_0.767|GO:0030312_0.760|GO:0042303_0.676|GO:0018996_0.670|GO:0040002_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0031012_0.662|GO:0062023_0.662|GO:0060102_0.540
|
IPR002486+25-77_28-77+|IPR008160+167-225_231-292+|IPR050632+30-304+
|
SM01088+25-77+
|
PF01391+167-225_231-292+Collagen_triple_helix_repeat_(20_copies)|PF01484+28-77+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+30-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;71-307
|
1.000
|
14-70
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.974
|
31023.680
|
6.812
|
1.500
|
17.915
|
6.515
|
36.156
|
63.844
|
9.772
|
8.143
|
65.147
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
17757.599
|
6238.319
|
294.025
|
127.277
|
23409.551
|
128214.613
|
413.969
|
26696.086
|
121.488
|
8075.691
|
4666.747
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.635
|
-5.752
|
-1.100
|
7.491
|
2.469
|
-8.264
|
-2.383
|
-5.861
|
-6.203
|
— |
2.300
|
— | — |
No JSON data available for plots.