Hg_chrom4_TN10mRNA_7565
Organism: Heterodera glycines Gene Locus: chr4:4413168-4414039 Feature type: polypeptideProtein Sequence
Length: 210
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.886 | 1.107 | 0.779 | 0.328 | 1.746 | 0.855 | 0.397 | 0.714 | 0.952 | 1.48 | 0.794 | 1.681 | 1.72 | 0.641 | 1.749 | 1.088 | 0.781 | 1.154 | 0.366 | 0.56 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7150
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.886
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.415
|
0.259
|
0.108
|
0.115
|
0.790
|
0.314
|
0.448
|
0.038
|
0.056
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008441
|
1.000
|
1.000
|
Hsc_gene_10047.t1
|
Hsc_gene_10047.t1
|
— | — |
KAH7698978.1 Protein F09E5.11 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070072
|
GO:0005575_0.669|GO:0110165_0.669|GO:0016020_0.628|GO:0008150_0.608|GO:0005622_0.583|GO:0071944_0.570|GO:0009987_0.564|GO:0043226_0.564|GO:0005886_0.559|GO:0043229_0.529|GO:0005737_0.525|GO:0043227_0.521|GO:0043231_0.503
|
IPR021013+26-209_84-197+
|
— |
PF11712+84-197+Endoplasmic_reticulum-based_factor_for_assembly_of_V-ATPase
|
— |
PTHR31394+26-209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
209-210
|
1.000
|
1-208
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.510
|
24138.630
|
6.274
|
-0.500
|
30.000
|
10.000
|
50.476
|
49.524
|
15.238
|
14.762
|
44.286
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
957.944
|
896.774
|
787.637
|
606.360
|
724.415
|
640.552
|
988.232
|
952.828
|
1215.581
|
1180.520
|
1195.546
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.418
|
-0.702
|
-0.268
|
0.225
|
— |
0.637
|
0.468
|
0.196
|
— | — | — | — | — |
No JSON data available for plots.