Hg_chrom4_TN10mRNA_7568
Organism: Heterodera glycines Gene Locus: chr4:4422737-4423920 Feature type: polypeptideProtein Sequence
Length: 147
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.712 | 0.791 | 0.495 | 0.704 | 0.454 | 0.523 | 1.377 | 4.422 | 0.756 | 0.827 | 2.061 | 0.8 | 0.756 | 0.785 | 1.666 | 0.486 | 0.669 | 1.34 | 0.523 | 1.2 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7153
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.884
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKTRKLRGHVSHGHGRVGKHRKHPGGRGN
|
1-22
|
0.936
|
— | — | — | — |
0.000
|
— | — |
0.737
|
0.151
|
0.104
|
0.578
|
0.221
|
0.037
|
0.077
|
0.004
|
0.025
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008444
|
1.000
|
1.000
|
Hsc_gene_10056.t1
|
Hsc_gene_10056.t1
|
— |
O01358.1 Large ribosomal subunit protein uL15 [Oscheius tipulae]
|
KAI3418764.1 60S ribosomal protein L27A [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0015934
|
GO:0005575_0.846|GO:0110165_0.842|GO:0005622_0.749|GO:0043226_0.712|GO:0043229_0.709|GO:0005737_0.677|GO:0003674_0.607|GO:0043228_0.551|GO:0043232_0.550|GO:0016020_0.527|GO:0005829_0.505
|
IPR001196+109-140+|IPR021131+28-144+|IPR027386+4-50+|IPR030878+1-146+|IPR036227+5-146+
|
— |
PF00828+28-144+Ribosomal_proteins_50S-L15,_50S-L18e,_60S-L27A
|
G3DSA:3.100.10.10:FF:000002+58-147+60S_ribosomal_protein_L27a
|
PTHR11721+1-146+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-52
|
1.000
|
53-147
|
7oyb_a1
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.909
|
16603.350
|
11.163
|
30.500
|
36.054
|
16.327
|
48.980
|
51.020
|
30.612
|
5.442
|
46.259
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
10298.891
|
4025.771
|
6084.174
|
11603.447
|
12534.844
|
10034.472
|
6946.288
|
3618.412
|
17243.863
|
11556.972
|
13994.211
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.366
|
1.390
|
1.040
|
— |
-0.305
|
-0.520
|
-1.579
|
1.085
|
— | — | — | — | — |
No JSON data available for plots.