Hg_chrom4_TN10mRNA_7569
Organism: Heterodera glycines Gene Locus: chr4:4424098-4424624 Feature type: polypeptideProtein Sequence
Length: 113
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.47 | 0.0 | 0.965 | 0.0 | 1.77 | 0.908 | 1.159 | 0.0 | 0.59 | 1.076 | 1.073 | 1.562 | 0.737 | 1.021 | 0.0 | 0.632 | 0.87 | 1.341 | 0.681 | 0.521 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7154
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.360
|
0.286
|
0.062
|
0.558
|
0.165
|
0.300
|
0.231
|
0.004
|
0.153
|
0.355
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008445
|
1.000
|
1.000
|
Hsc_gene_10057.t1
|
Hsc_gene_10057.t1
|
— |
P91913.2 Large ribosomal subunit protein P1 [Caenorhabditis elegans]
|
KAI1717391.1 60s acidic ribosomal protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0006414
|
GO:0005575_0.893|GO:0110165_0.881|GO:0005622_0.769|GO:0005737_0.706|GO:0003674_0.679|GO:0043226_0.586|GO:0043229_0.575|GO:0005829_0.572
|
IPR001859+26-37_74-85_100-111+|IPR027534+7-113+|IPR038716+1-64+
|
— |
PF00428+23-112+60s_Acidic_ribosomal_protein
|
G3DSA:1.10.10.1410:FF:000001+1-64+60S_acidic_ribosomal_protein_P1
|
PTHR45696+3-113+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
72-113
|
1.000
|
1-71
|
4v6x_Ct
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
11450.940
|
3.965
|
-10.000
|
23.009
|
5.310
|
36.283
|
63.717
|
7.080
|
15.929
|
60.177
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
8060.745
|
3252.838
|
6041.214
|
10779.385
|
10598.450
|
8291.749
|
4413.290
|
2784.740
|
17386.255
|
4915.443
|
10260.077
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
1.591
|
0.945
|
— |
-0.339
|
-0.900
|
-1.681
|
0.808
|
1.707
|
— | — | — | — |
No JSON data available for plots.