Hg_chrom4_TN10mRNA_7570
Organism: Heterodera glycines Gene Locus: chr4:4425313-4428196 Feature type: polypeptideProtein Sequence
Length: 383
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.972 | 1.093 | 0.522 | 0.45 | 0.522 | 0.736 | 1.088 | 0.653 | 1.741 | 1.447 | 0.554 | 1.689 | 2.103 | 0.803 | 0.746 | 1.082 | 0.556 | 1.622 | 1.406 | 0.691 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7155
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.078
|
0.065
|
0.060
|
0.154
|
0.447
|
0.531
|
0.594
|
0.132
|
0.349
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008446
|
1.000
|
1.000
|
Hsc_gene_10058.t3
|
Hsc_gene_10058.t3
|
— |
Q7Z5S9.1 Transmembrane protein 144 [Homo sapiens]
|
XP_042934104.1 T-cell receptor beta chain ANA 11, putative [Brugia malayi];VIO93159.1 T-cell receptor beta chain ANA 11, putative [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015144|GO:0016020|GO:0034219
|
— |
IPR010651+8-381+|IPR012435+11-381+|IPR036259+44-375+
|
— |
PF07857+11-381+Transmembrane_family,_TMEM144_of_transporters
|
— |
PTHR16119+8-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-383
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
41726.050
|
8.843
|
7.500
|
14.621
|
13.055
|
33.159
|
66.841
|
8.616
|
6.005
|
52.219
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
677.612
|
2155.731
|
65.967
|
40.200
|
24.670
|
32.215
|
69.742
|
78.001
|
168.125
|
1913.513
|
1165.489
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.263
|
-5.882
|
-0.605
|
-0.738
|
— |
1.123
|
1.171
|
— |
-3.643
|
— |
-6.041
|
— | — |
No JSON data available for plots.