Hg_chrom4_TN10mRNA_7571
Organism: Heterodera glycines Gene Locus: chr4:4428662-4431472 Feature type: polypeptideProtein Sequence
Length: 408
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 0.969 | 0.668 | 0.592 | 0.408 | 0.88 | 1.255 | 0.858 | 1.416 | 1.424 | 0.446 | 1.009 | 2.042 | 0.754 | 0.95 | 1.225 | 0.844 | 1.597 | 1.131 | 0.721 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7156
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.071
|
0.064
|
0.059
|
0.141
|
0.491
|
0.582
|
0.622
|
0.135
|
0.332
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003804
|
1.000
|
2.000
|
Hsc_gene_10058.t1;Hsc_gene_10058.t2
|
Hsc_gene_10058.t1;Hsc_gene_10058.t2
|
— |
Q10000.3 Transmembrane protein 144 homolog [Caenorhabditis elegans]
|
XP_042934104.1 T-cell receptor beta chain ANA 11, putative [Brugia malayi];VIO93159.1 T-cell receptor beta chain ANA 11, putative [Brugia malayi]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015144|GO:0016020|GO:0034219
|
— |
IPR010651+8-406+|IPR012435+11-175_230-406+
|
— |
PF07857+11-175_230-406+Transmembrane_family,_TMEM144_of_transporters
|
— |
PTHR16119+8-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
157-243
|
2.000
|
1-156;244-408
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
44207.260
|
8.765
|
9.500
|
15.441
|
12.990
|
36.765
|
63.235
|
9.314
|
6.127
|
54.902
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
289.039
|
288.990
|
271.399
|
162.825
|
74.093
|
129.177
|
182.351
|
369.951
|
291.261
|
491.555
|
405.715
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.319
|
-0.965
|
-0.629
|
-1.168
|
0.816
|
0.509
|
1.413
|
-0.877
|
— | — | — | — | — |
No JSON data available for plots.