SCN Proteipedia

Hg_chrom4_TN10mRNA_7572

Organism: Heterodera glycines Gene Locus: chr4:4433514-4439117 Feature type: polypeptide

Protein Sequence

Length: 966

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.867	1.348	0.621	0.821	0.932	2.256	0.764	1.501	1.127	1.259	0.706	1.461	1.236	1.035	0.845	0.976	1.018	0.8	0.956	0.609	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7157	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-pJ2_J3_J4_Male	0.962

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	RKTIVGTPAYLAPEVLKKK	—	—	—	—	—	—	0.000	—	—	0.425	0.158	0.022	0.639	0.153	0.431	0.232	0.026	0.316	0.047

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008447	1.000	1.000	Hsc_gene_10059.t1	Hsc_gene_10059.t1;Hsc_gene_15660.t1	—	Q9XUJ7.1 Serine/threonine-protein kinase dkf-1 [Caenorhabditis elegans]	KAI3418775.1 Dkf-1p [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.966\|GO:0009987_0.916\|GO:0005575_0.861\|GO:0110165_0.855\|GO:0065007_0.842\|GO:0050789_0.831\|GO:0050794_0.818\|GO:0003674_0.794\|GO:0005622_0.779\|GO:0050896_0.770\|GO:0003824_0.742\|GO:0140096_0.742\|GO:0016740_0.709\|GO:0007154_0.678\|GO:0023052_0.678\|GO:0016772_0.672\|GO:0051716_0.670\|GO:0004672_0.661\|GO:0016301_0.661\|GO:0016773_0.661\|GO:0008152_0.640\|GO:0043170_0.640\|GO:0016020_0.633\|GO:0032501_0.633\|GO:0044237_0.621\|GO:0048518_0.617\|GO:0005737_0.603\|GO:0007165_0.598\|GO:0048522_0.598\|GO:0004674_0.589\|GO:0044238_0.557\|GO:0009058_0.506\|GO:0043226_0.504	IPR000719+606-865_607-865+\|IPR002219+215-265_216-265_216-266_312-362_313-362_315-364+\|IPR008271+727-739+\|IPR011009+607-897+\|IPR011993+446-587+\|IPR017441+612-639+\|IPR020454+213-227_229-238_339-350_351-363+\|IPR046349+205-265_304-366+	SM00109+216-265_313-362+\|SM00220+606-865+	PF00069+607-865+Protein_kinase_domain\|PF00130+216-266_315-364+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)	G3DSA:1.10.510.10:FF:000571+597-879+Maternal_embryonic_leucine_zipper_kinase\|G3DSA:3.30.200.20:FF:000042+599-690+Aurora_kinase_A	PTHR22968+109-910+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-99;365-421;915-966	2.000	100-364;422-914	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.752	107712.360	7.319	12.500	20.807	10.766	48.447	51.553	11.801	9.006	49.172

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	brown	766.440	587.261	969.401	1349.272	1533.063	2364.927	675.465	951.080	92.700	122.226	109.572

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.496	1.063	0.584	0.152	0.640	-1.798	-1.421	-0.351	—	—	4.552	—	—

No JSON data available for plots.

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