Hg_chrom4_TN10mRNA_7574
Organism: Heterodera glycines Gene Locus: chr4:4441536-4446820 Feature type: polypeptideProtein Sequence
Length: 1,005
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.486 | 1.365 | 0.977 | 0.206 | 2.72 | 0.663 | 0.616 | 0.647 | 0.663 | 0.672 | 2.864 | 0.644 | 0.608 | 0.67 | 0.833 | 1.251 | 1.191 | 0.633 | 0.23 | 0.117 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7159
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.778
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,KRKL,KKSNERLNEGDKDEKR,KKSDQGNESKEKKKDS,KKSNERLTEGEKEAKR,KKSNERLNEGDKDEKK,KKSNERLIEGVKETKR,KKKNNEKIMESEKRKES,KKTNGEKEVKKEKKDDK,KKTDGEKEVKKEKKDAR,KKTNEEKEVKKDKKKSD,KKTNGEKEVLKDKKDDK,KKTNGEKEVLKDKKKSD,KKTNGEKEAKKKDKKKSG,KKKDSEKELKKKDKKKSD,KKTNMEKEAKKKDKKKSD,KKPNGETEVKKDKKKIDK,RKLKENAEEKAEGEKEAKK,KRKESNEKKTNGEKEAKKK,RKESNEKKTNGEKEAKKKD,RKESNEKKTNMEKEAKKKD,RKESNEKKPNGETEVKKDK,KKVAEESGKRKEGKKKKAN,RKEGKKKKANEETELKKDK,KKKKANEETELKKDKKKTD,RKESNEKKADSERELKKKD,KKADSERELKKKDKKKTDKESTKVTEKK
|
20-40
|
0.984
|
10-40
|
1.000
|
— | — |
0.000
|
— | — |
0.895
|
0.050
|
0.008
|
0.441
|
0.040
|
0.049
|
0.040
|
0.006
|
0.074
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003805
|
1.000
|
2.000
|
Hsc_gene_10061.t1;Hsc_gene_15661.t1
|
Hsc_gene_15661.t1
|
— |
Q10319.1 Protein AF-9 homolog [Schizosaccharomyces pombe 972h-]
|
KAI3414009.1 Protein ENL [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355
|
GO:0005575_0.963|GO:0110165_0.963|GO:0005622_0.950|GO:0043226_0.935|GO:0043229_0.915|GO:0016020_0.910|GO:0043227_0.864|GO:0008150_0.842|GO:0043231_0.839|GO:0005634_0.801|GO:0009987_0.730|GO:0043228_0.699|GO:0043232_0.699|GO:0032991_0.678|GO:0065007_0.676|GO:0050789_0.662|GO:0031974_0.570|GO:0031981_0.570|GO:0043233_0.570|GO:0070013_0.570|GO:0050794_0.565|GO:0008152_0.530|GO:0043170_0.530|GO:0071840_0.509|GO:0016043_0.501
|
IPR005033+22-157_48-128+|IPR038704+23-171+|IPR052790+30-383+
|
— |
PF03366+48-128+YEATS_family
|
— |
PTHR47827+30-383+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;152-937;1005-1005
|
2.000
|
19-151;938-1004
|
9arr_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
114133.010
|
9.328
|
19.500
|
45.970
|
4.179
|
70.448
|
29.552
|
24.279
|
21.692
|
44.876
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2027.930
|
1402.686
|
1673.963
|
1279.081
|
1594.780
|
1520.143
|
1800.157
|
1136.027
|
2927.379
|
2774.098
|
2839.790
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.270
|
-0.278
|
0.287
|
— |
0.255
|
-0.527
|
0.807
|
— | — | — | — |
3.148
|
No JSON data available for plots.