SCN Proteipedia

Hg_chrom4_TN10mRNA_7576

Organism: Heterodera glycines Gene Locus: chr4:4448245-4452431 Feature type: polypeptide

Protein Sequence

Length: 650

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.698	0.894	0.755	0.743	0.846	1.42	0.549	1.154	1.094	1.289	0.606	2.262	1.453	0.858	1.664	1.209	1.034	0.956	1.538	0.905	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7160	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRGRHNSVDEAREVRR	—	—	—	—	—	—	0.000	—	—	0.053	0.047	0.014	0.120	0.308	0.191	0.290	0.020	0.623	0.078

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002061	2.000	2.000	Hsc_gene_10063.t1;Hsc_gene_10063.t2	Hsc_gene_10062.t1;Hsc_gene_10063.t1;Hsc_gene_10063.t2	—	Q9I8C7.1 Neuronal acetylcholine receptor subunit alpha-10 [Gallus gallus]	KAI3418777.1 Neurotransmitter-gated ion-channel ligand binding domain [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0005575_0.891\|GO:0110165_0.891\|GO:0008150_0.885\|GO:0016020_0.826\|GO:0009987_0.821\|GO:0071944_0.795\|GO:0005886_0.764\|GO:0065007_0.729\|GO:0050789_0.688\|GO:0051179_0.638\|GO:0006810_0.627\|GO:0051234_0.627\|GO:0003674_0.622\|GO:0050794_0.620\|GO:0007154_0.591\|GO:0032501_0.590\|GO:0050896_0.584\|GO:0023052_0.580\|GO:0030054_0.531\|GO:0055085_0.531\|GO:0051716_0.521\|GO:0006811_0.517\|GO:0065008_0.516\|GO:0034220_0.512\|GO:0007267_0.509\|GO:0045202_0.505\|GO:0098916_0.505\|GO:0099536_0.505\|GO:0099537_0.505\|GO:0007268_0.503	IPR006029+305-628+\|IPR006201+49-446_93-109_126-137_171-185_292-304+\|IPR006202+47-213+\|IPR018000+171-185+\|IPR036719+298-631+\|IPR036734+42-300_45-298+\|IPR038050+301-423+	—	PF02931+47-213+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+305-628+Neurotransmitter-gated_ion-channel_transmembrane_region	—	PTHR18945+49-446+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	482-545	2.000	1-481;546-650	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.830	74867.200	9.499	26.500	23.692	12.615	47.846	52.154	14.462	9.231	46.308

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	turquoise	188.508	132.136	372.677	199.864	67.437	54.696	75.765	213.585	53.695	365.890	232.092

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.267	0.460	-0.789	-1.597	—	0.479	1.865	-1.356	—	—	—	—	—

No JSON data available for plots.

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