Hg_chrom4_TN10mRNA_7580
Organism: Heterodera glycines Gene Locus: chr4:4464712-4467056 Feature type: polypeptideProtein Sequence
Length: 607
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.824 | 1.877 | 1.258 | 0.284 | 0.851 | 1.647 | 2.079 | 0.906 | 0.22 | 0.445 | 0.524 | 0.581 | 1.007 | 1.552 | 1.547 | 1.059 | 0.459 | 0.3 | 0.127 | 1.744 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7163
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_10067
|
— |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
GRKRVQNRRNGGRRTKRR,RKRVQNRRNGGRRTKRRTM
|
— | — | — | — | — |
0.828
|
0.335
|
0.000
|
— |
0.316
|
0.166
|
0.038
|
0.228
|
0.065
|
0.015
|
0.053
|
0.010
|
0.067
|
0.919
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003807
|
1.000
|
2.000
|
Hsc_gene_10067.t1;Hsc_gene_10067.t2
|
Hsc_gene_10067.t1;Hsc_gene_10067.t2
|
— | — |
KAI3418781.1 hypothetical protein GPALN_007884 [Globodera pallida]
|
MBY0498137
|
0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-607
|
1.000
|
1-36
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
65060.270
|
6.441
|
-0.500
|
24.876
|
11.532
|
49.588
|
50.412
|
12.850
|
12.026
|
60.626
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1443.192
|
56.736
|
1098.759
|
654.172
|
430.599
|
89.275
|
114.466
|
349.144
|
6131.267
|
668.082
|
3009.447
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.047
|
3.391
|
-0.639
|
-0.634
|
-2.256
|
0.369
|
1.862
|
-1.467
|
3.075
|
-3.050
|
— | — | — |