Hg_chrom4_TN10mRNA_7581
Organism: Heterodera glycines Gene Locus: chr4:4468246-4472711 Feature type: polypeptideProtein Sequence
Length: 852
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.024 | 0.983 | 0.662 | 0.89 | 0.802 | 0.752 | 1.09 | 0.998 | 1.2 | 1.364 | 0.622 | 1.657 | 1.598 | 0.835 | 0.982 | 1.19 | 0.808 | 1.067 | 1.174 | 0.794 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7164
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.646
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.094
|
0.095
|
0.098
|
0.120
|
0.269
|
0.481
|
0.386
|
0.047
|
0.810
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003808
|
1.000
|
2.000
|
Hsc_gene_10068.t1;Hsc_gene_10068.t2
|
Hsc_gene_10068.t1;Hsc_gene_10068.t2
|
— |
Q9QXZ6.1 Solute carrier organic anion transporter family member 1A1 [Mus musculus]
|
KAI1707365.1 organic anion transporter polypeptide (OATP) family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016020|GO:0055085
|
GO:0008150_0.907|GO:0005575_0.779|GO:0110165_0.776|GO:0009987_0.764|GO:0071944_0.728|GO:0016020_0.719|GO:0003674_0.707|GO:0005886_0.703|GO:0006810_0.688|GO:0051179_0.688|GO:0051234_0.688|GO:0055085_0.570|GO:0005215_0.534|GO:0022857_0.519|GO:0015711_0.506
|
IPR004156+10-690_10-747_197-717+|IPR036058+531-565+|IPR036259+5-144_12-723_244-536+
|
— |
PF03137+10-690+Organic_Anion_Transporter_Polypeptide_(OATP)_family
|
— |
PTHR11388+10-747+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
728-852
|
1.000
|
1-727
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
92903.070
|
7.835
|
12.500
|
19.366
|
11.972
|
39.789
|
60.211
|
10.915
|
8.451
|
53.052
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
623.997
|
684.359
|
870.948
|
416.661
|
512.202
|
455.885
|
1000.784
|
818.621
|
559.885
|
525.275
|
540.108
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.853
|
-0.956
|
0.266
|
— |
1.145
|
0.745
|
0.430
|
— | — | — | — | — |
No JSON data available for plots.