Hg_chrom4_TN10mRNA_7582
Organism: Heterodera glycines Gene Locus: chr4:4472814-4474569 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.581 | 1.302 | 0.873 | 0.276 | 1.6 | 3.282 | 0.286 | 1.2 | 1.244 | 1.297 | 1.455 | 0.941 | 0.667 | 0.154 | 1.633 | 0.229 | 0.525 | 0.606 | 0.0 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7165
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.537
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
DARKRKAQRLK,KRAAEKINDARKRKAQR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.203
|
0.599
|
0.083
|
0.566
|
0.340
|
0.429
|
0.388
|
0.057
|
0.368
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008450
|
1.000
|
1.000
|
Hsc_gene_10069.t1
|
Hsc_gene_10069.t1
|
— |
Q617N0.1 Probable V-type proton ATPase subunit G [Caenorhabditis briggsae]
|
AFG25453.1 vha-10 [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016471|GO:0046961|GO:1902600
|
GO:0005575_0.835|GO:0110165_0.826|GO:0005622_0.787|GO:0008150_0.735|GO:0005737_0.706|GO:0009987_0.704|GO:0016020_0.685|GO:0043226_0.608|GO:0043229_0.592|GO:0043227_0.534|GO:0043231_0.517
|
IPR005124+1-113_3-106_5-107+
|
— |
PF03179+3-106+Vacuolar_(H+)-ATPase_G_subunit
|
G3DSA:1.20.5.2950:FF:000001+1-114+V-type_proton_ATPase_subunit_G
|
PTHR12713+5-107+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-58
|
1.000
|
59-125
|
7une_f
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
14452.420
|
9.875
|
5.500
|
34.400
|
6.400
|
57.600
|
42.400
|
20.000
|
14.400
|
36.800
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
2742.380
|
2351.138
|
2196.617
|
2236.854
|
2868.070
|
2729.560
|
2072.264
|
3151.019
|
4403.161
|
2093.472
|
3083.339
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.327
|
-0.209
|
0.134
|
0.327
|
— |
-0.386
|
— |
-0.461
|
— | — | — | — | — |
No JSON data available for plots.